Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1641 ATGGTGATGATGCTGGATCCCAGGGAGCAAAGCAAGAAGAAAAAGAGAGGCCAGCGTGCTGTCGGAGGTGACAAGAGTGGAAGGGGGCTTCGCCAATTTAGCATGAAAGTATGTGAAAAGGTGGAAAGTAAGGGAAGAACCACTTACAATGAGGTTGCAGATGAACTTGTGGCTGAATTTGCTGACCCAAGCAGTAGTGTTTCAACTCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTTTATGATGCTTTGAATGTTCTCATGGCAATGGATATAATTTCCAAGGATAAAAAGGAAATTCAATGGAAGGGTCTCCCTCGTACAAGTCTGAATGATATTGAAGAATTAAAGTCGGAGCGTCTTCAGCTTAGGAATCGGATTGAAAAGAAAGCTGCCTACCTGCAAGAGCTGGAGGAGCAATACATAGGTCTTCAGAATCTCATACAACGAAATGAGCAATTATATGGCTCAGGAAATGCTCCCAGTGGAGGTGTAGCCTTACCTTTTATTCTTGTACAGACTCGTCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTACATTTTGATTTCAACAGCACCCCTTTTGAGCTACATGATGACAACTATGTCCTCAAGGCAATGAAATTTTGTGAGAGACCACAGAATGATAATATGACACAAAATCTTGCCGACGGCGGTGAAGGTTCTAGCATGTCAGGCTTGTATCAGGCGCAGGTCACTCCGTCAGTTTCAAACCAACCGGTTAGAACTCCGACCTCGCCACCTCTCCCTGGAATCTTGAAGGCAAGAGTTAAGCACGAGCATTGA 834 0.4412 MVMMLDPREQSKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSSSVSTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKSERLQLRNRIEKKAAYLQELEEQYIGLQNLIQRNEQLYGSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQNDNMTQNLADGGEGSSMSGLYQAQVTPSVSNQPVRTPTSPPLPGILKARVKHEH 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1641 277 SMART DP_2 115 275 IPR014889 -
Prci6g1641 277 SUPERFAMILY "Winged helix" DNA-binding domain 28 109 IPR036390 -
Prci6g1641 277 MobiDBLite consensus disorder prediction 249 277 - -
Prci6g1641 277 Gene3D - 19 113 IPR036388 -
Prci6g1641 277 MobiDBLite consensus disorder prediction 7 22 - -
Prci6g1641 277 CDD DP_DD 113 216 IPR014889 -
Prci6g1641 277 PIRSF Txn_factor_DP 5 277 IPR015648 GO:0005667|GO:0051726
Prci6g1641 277 FunFam Transcription factor-like protein DPB 20 113 - -
Prci6g1641 277 Coils Coil 117 158 - -
Prci6g1641 277 FunFam Transcription factor-like protein DPB 114 238 - -
Prci6g1641 277 PANTHER TRANSCRIPTION FACTOR DP 8 255 IPR015648 GO:0005667|GO:0051726
Prci6g1641 277 SMART E2F_TDP_2 25 108 IPR003316 GO:0005667|GO:0006355
Prci6g1641 277 Pfam Transcription factor DP 116 230 IPR014889 -
Prci6g1641 277 MobiDBLite consensus disorder prediction 1 28 - -
Prci6g1641 277 Pfam E2F/DP family winged-helix DNA-binding domain 28 108 IPR003316 GO:0005667|GO:0006355
Prci6g1641 277 SUPERFAMILY E2F-DP heterodimerization region 114 229 IPR037241 -
Prci6g1641 277 Gene3D Transcription factor DP 114 237 IPR038168 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1641 Prci-Chr6 13404180 13410690 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1641 3 224 E2F-DP Transcription Factor Family AT5G02470 51.570 1.38e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Prci6g1641 DP 6.3e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1641 K04683 - zju:107414839 494.582