Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1639 ATGGGGACACGACCTCAGCAACCATGTCGAGAGGAAGAGGAGGATGAGCTGCTAGGTCGTGGAACAACACTTTCTGGCCAATCAATTTCCACGAGTAAAAGTGTAGGGTCACCATCCAGTCGGAGTGAGCAGACAATGGCTACGCCGGCTAGTGATAACACTTTTCTAAGACTTAATCATCTCGACATCCATGGTGATGATGCTGGATCCCAGGGAGCAGTTGCAAGCAAGAAGAAAAAGAGAGGCCAGCGTGCTGTCGGAGGTGACAAGAGTGGAAGGGGGCTTCGCCAATTTAGCATGAAAGTATGTGAAAAGGTGGAAAGTAAGGGAAGAACCACTTACAATGAGGTTGCAGATGAACTTGTGGCTGAATTTGCTGACCCAAGCAGTAGTGTTTCAACTCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTTTATGATGCTTTGAATGTTCTCATGGCAATGGATATAATTTCCAAGGATAAAAAGGAAATTCAATGGAAGGGTCTCCCTCGTACAAGTCTGAATGATATTGAAGAATTAAAGTCGGAGCGTCTTCAGCTTAGGAATCGGATTGAAAAGAAAGCTGCCTACCTGCAAGAGCTGGAGGAGCAATACATAGGTCTTCAGAATCTCATACAACGAAATGAGCAATTATATGGCTCAGGAAATGCTCCCAGTGGAGGTGTAGCCTTACCTTTTATTCTTGTACAGACTCGTCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTACATTTTGATTTCAACAGATAA 801 0.4419 MGTRPQQPCREEEEDELLGRGTTLSGQSISTSKSVGSPSSRSEQTMATPASDNTFLRLNHLDIHGDDAGSQGAVASKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSSSVSTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKSERLQLRNRIEKKAAYLQELEEQYIGLQNLIQRNEQLYGSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNR 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1639 266 SMART DP_2 180 266 IPR014889 -
Prci6g1639 266 PIRSF Txn_factor_DP 5 266 IPR015648 GO:0005667|GO:0051726
Prci6g1639 266 Gene3D Transcription factor DP 179 266 IPR038168 -
Prci6g1639 266 MobiDBLite consensus disorder prediction 1 93 - -
Prci6g1639 266 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667|GO:0006355
Prci6g1639 266 SUPERFAMILY E2F-DP heterodimerization region 179 265 IPR037241 -
Prci6g1639 266 PANTHER TRANSCRIPTION FACTOR DP 23 265 IPR015648 GO:0005667|GO:0051726
Prci6g1639 266 FunFam Transcription factor-like protein DPB 85 178 - -
Prci6g1639 266 Coils Coil 182 223 - -
Prci6g1639 266 SUPERFAMILY "Winged helix" DNA-binding domain 93 174 IPR036390 -
Prci6g1639 266 Gene3D - 85 178 IPR036388 -
Prci6g1639 266 Pfam Transcription factor DP 181 266 IPR014889 -
Prci6g1639 266 MobiDBLite consensus disorder prediction 21 55 - -
Prci6g1639 266 FunFam Transcription factor-like protein DPB 179 266 - -
Prci6g1639 266 CDD DP_DD 178 266 IPR014889 -
Prci6g1639 266 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1639 Prci-Chr6 13403578 13408762 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1639 91 265 E2F-DP Transcription Factor Family AT5G02470 55.682 3.67e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Prci6g1639 DP 2.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1639 K04683 - qsa:O6P43_019777 468.774