Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1629 ATGATACTGGCAACAACAACAGTGTCAATTTTTGTAAAATATCTTTTCTACGTTAGCGACATGCTTATGGAAGGACAATGGGAAAGGAAACCAGTTTTCACATTCTACTTGGAACTCATCAGGGATTTGCTTCACTTGTCTATGTATATGTGTTTCTTCCTTGTGATTTTCATAAATTATGGTGTGCCTTTACACTTAATACGGGAGCTGTATGAGACATTTAGGAACTTCAAAGTTCGTGTTGCTGACTACATTCGCTATCGTAAGATTACTTCAAATATGAATGATCGGTTTCCAGATGCAACCCCTGAAGAGCTTAACGCAAGTGATGCTACATGTATTATCTGTCGTGAAGAGATGACTACAGCCAAGAAACTTATATGTGGACATCTTTTTCATGTGCATTGCCTCCGATCATGGTTGGAGCGACAACATACTTGCCCTACCTGTAGAGCCTTGGTTGTACCACCTGAAAATGGGGCAACTACTGCTGGAGGGCAGCATGGATCACAGTCAGATCGACAGGGAACAGGAACTAATACTGGAAACTCATCTCAAGCTGAAGGTGGCAGTGGGGTGGCTACTGATAATTTGAGTCGTCATCAAGCTAGACTCCAAGCTGCTGCTGCTGCTGCTGCAATGTATGAGAAGTCTTTTGTGTACCCATCACCATCTGCAACTTCTTTAGCATGCGCCCCTGGATATACTGTATATCCTCCTGTTCATAGACCTGCCGCTGAATCTACTAATACAGAGCTTAATGGAGAACATACTTCATGTGAACAAACACAACGACAATTTGTCATCCCTGGTGGACCAATGAATGTTTCCTTTCATCCAATGGGACCGTTTCTTATCCCTCCTTCTCTAACACATGTAGCAAACGTGAATTATGGAGAGGGATCTGGATCTGATCCGAATGGGCCAAACTCTCTTCTGGAAGCTCAAAGAACAATTCAATACCAGATTGAGATTCTGCAAAATCAGCTCCAGATTCTGCAGAACGCAAATGTAAATGAGGGCAAGTCGTCATCATCAATTAGCAAAGACAAGGAGGTTGCTTCCTCTTCATCTCTGCCTGATAATGGTCGTAATGAGGGGATTCAAGGCGGTACTCGGTAG 1122 0.4305 MILATTTVSIFVKYLFYVSDMLMEGQWERKPVFTFYLELIRDLLHLSMYMCFFLVIFINYGVPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGATTAGGQHGSQSDRQGTGTNTGNSSQAEGGSGVATDNLSRHQARLQAAAAAAAMYEKSFVYPSPSATSLACAPGYTVYPPVHRPAAESTNTELNGEHTSCEQTQRQFVIPGGPMNVSFHPMGPFLIPPSLTHVANVNYGEGSGSDPNGPNSLLEAQRTIQYQIEILQNQLQILQNANVNEGKSSSSISKDKEVASSSSLPDNGRNEGIQGGTR 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1629 373 MobiDBLite consensus disorder prediction 161 194 - -
Prci6g1629 373 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 85 160 - -
Prci6g1629 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 158 IPR013083 -
Prci6g1629 373 SMART ring_2 113 150 IPR001841 -
Prci6g1629 373 ProSiteProfiles Zinc finger RING-type profile. 113 151 IPR001841 -
Prci6g1629 373 SUPERFAMILY RING/U-box 93 157 - -
Prci6g1629 373 PANTHER RING ZINC FINGER PROTEIN 1 335 - -
Prci6g1629 373 MobiDBLite consensus disorder prediction 338 373 - -
Prci6g1629 373 Pfam Ring finger domain 112 151 IPR001841 -
Prci6g1629 373 CDD RING-H2_synoviolin 110 151 - -
Prci6g1629 373 MobiDBLite consensus disorder prediction 163 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1629 Prci-Chr6 13310753 13317823 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1629 1 265 C3H Transcription Factor Family AT3G16090 65.580 1.10e-127 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1629 K10601 - gmx:100816441 498.049