Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1628 ATGATGAGGCTACAGTCGTATGCGGGGCTTAGTTTCATTGCAACTCTAGCTGTTACGTATCATGCATTCAACAGCAGAGGTCAATTTTATCCAGCAATGGTTTTTCTGTCAACTTCCAAGATCAGCTTGGTACTTCTTCTCAACATGGGTCTGGTCATTATGTGTCTTTTATGGCAATTAACAAAGAAGGTATTTCTTGGCACACTCCGAGAGGCAGAGGTTGAGAGGCTTAATGAGCAATCATGGAGGGAGGTTATGGAAATCCTTTTTGCCATCACCATTTTTAGGCAGGATTTCTCTGTTACATTCCTTGCTATGGTCACAGCACTGTTGTTGATCAAAGCTTTACATTGGTTGGCTCAGAAAAGAGTTGAATATATTGAGACCACTCCTACAGTGCCCTTGTTGTCTCACATTCGAATTGTGTCTTTTATGGGTTTCCTCCTCCTTCTGGATGGACTGTTTTTATATAGTTCCGTGAAGCATTTGATACTGTCATGGCAGGCTTCAGTTTCCCTCTTTTTTGCTTTTGAGTACATGATACTGGCAACAACAACAGTGTCAATTTTTGTAAAATATCTTTTCTACGTTAGCGACATGCTTATGGAAGGACAATGGGAAAGGAAACCAGTTTTCACATTCTACTTGGAACTCATCAGGGATTTGCTTCACTTGTCTATGTATATGTGTTTCTTCCTTGTGATTTTCATAAATTATGGTGTGCCTTTACACTTAATACGGGAGCTGTATGAGACATTTAGGAACTTCAAAGTTCGTGTTGCTGACTACATTCGCTATCGTAAGATTACTTCAAATATGAATGATCGGTTTCCAGATGCAACCCCTGAAGAGCTTAACGCAAGTGATGCTACATGTATTATCTGTCGTGAAGAGATGACTACAGCCAAGAAACTTATATGTGGACATCTTTTTCATGTGCATTGCCTCCGATCATGGTTGGAGCGACAACATACTTGCCCTACCTGTAGAGCCTTGGTTGTACCACCTGAAAATGGGGCAACTACTGCTGGAGGGCAGCATGGATCACAGTCAGATCGACAGGGAACAGGAACTAATACTGGAAACTCATCTCAAGCTGAAGGTGGCAGTGGGGTGGCTACTGATAATTTGAGTCGTCATCAAGCTAGACTCCAAGCTGCTGCTGCTGCTGCTGCAATGTATGAGAAGTCTTTTGTGTACCCATCACCATCTGCAACTTCTTTAGCATGCGCCCCTGGATATACTGTATATCCTCCTGTTCATAGACCTGCCGCTGAATCTACTAATACAGAGCTTAATGGAGAACATACTTCATGTGAACAAACACAACGACAATTTGTCATCCCTGGTGGACCAATGAATGTTTCCTTTCATCCAATGGGACCGTTTCTTATCCCTCCTTCTCTAACACATGTAGCAAACGTGAATTATGGAGAGGGATCTGGATCTGATCCGAATGGGCCAAACTCTCTTCTGGAAGCTCAAAGAACAATTCAATACCAGATTGAGATTCTGCAAAATCAGCTCCAGATTCTGCAGAACGCAAATGTAAATGAGGGCAAGTCGTCATCATCAATTAGCAAAGACAAGGAGGTTGCTTCCTCTTCATCTCTGCCTGATAATGGTCGTAATGAGGGGATTCAAGGCGGTACTCGGTAG 1659 0.4262 MMRLQSYAGLSFIATLAVTYHAFNSRGQFYPAMVFLSTSKISLVLLLNMGLVIMCLLWQLTKKVFLGTLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPTVPLLSHIRIVSFMGFLLLLDGLFLYSSVKHLILSWQASVSLFFAFEYMILATTTVSIFVKYLFYVSDMLMEGQWERKPVFTFYLELIRDLLHLSMYMCFFLVIFINYGVPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGATTAGGQHGSQSDRQGTGTNTGNSSQAEGGSGVATDNLSRHQARLQAAAAAAAMYEKSFVYPSPSATSLACAPGYTVYPPVHRPAAESTNTELNGEHTSCEQTQRQFVIPGGPMNVSFHPMGPFLIPPSLTHVANVNYGEGSGSDPNGPNSLLEAQRTIQYQIEILQNQLQILQNANVNEGKSSSSISKDKEVASSSSLPDNGRNEGIQGGTR 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1628 552 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
Prci6g1628 552 SUPERFAMILY RING/U-box 272 336 - -
Prci6g1628 552 Pfam Ring finger domain 291 330 IPR001841 -
Prci6g1628 552 MobiDBLite consensus disorder prediction 340 373 - -
Prci6g1628 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Prci6g1628 552 MobiDBLite consensus disorder prediction 517 552 - -
Prci6g1628 552 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Prci6g1628 552 SMART ring_2 292 329 IPR001841 -
Prci6g1628 552 CDD RING-H2_synoviolin 289 330 - -
Prci6g1628 552 MobiDBLite consensus disorder prediction 342 373 - -
Prci6g1628 552 PANTHER RING ZINC FINGER PROTEIN 1 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1628 Prci-Chr6 13310753 13317899 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1628 1 444 C3H Transcription Factor Family AT3G16090 71.209 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1628 K10601 - gmx:100816441 809.675