Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1619 ATGGTTGCTGTTTCTCTGTGTATAGCAAAAATGATGAGGCTACAGTCGTATGCAGCGCTTAGTTTCCTTGCAACTCTAGCTGTTACGCATCATGCATTCAACAGCAGAGGTCAATTTTATCCAGCAATGGTTTTTCGGTCAACTTCCAAGATCAACTTGGTACTTCTTCTCAACATGGGTCTGGTCATTATGTGTCTTTTATGGCAATTAACAAAGAAGGTATTTCTTGGCACACTCCGAGAGGCAGAGGTTGAGAGGCTTAATGAGCAATCATGGAGGGAGGTTATGGAAATCCTTTTTGCCATCACCATTTTTAGGCAGGATTTCTCTGTTACATTCCTTGCTATGGTCACAGCACTGTTGTTGATCAAAGCTTTACATTGGTTGGCTCAGAAAAGAGTTGAGTATATTGAGACCACTCCTGCAGTGCCCTTGTTGTCTCACATTCGAATTGTGTCTATGGGTTTCCTCCTCCTTCTGGATGGACTGTTTTTTTATAGTTCCGTGAAGCATTTGATACTATCATGGCAGGCTTCAGTTTCCCTCTTTTTTGCTTTTAAGTACATGATACTGGCAACAACGACAGTGTCAATTTTTGTAAAATATCTTTTCTACGTTAGCGACATGGAAGGACAATGGGAAAGGAAACCAGTCTTCACATTCTACTTGGAACTCATCAGGGATTTGCTTCACTTGTCTATGTATATGTGTTTCTTCCTCGTGATTTTCATGAACTTCAAAGTTCGTGTTGCTGACTACATACGCTATCATAAGATTACTTCAAATATGAATGATCGGTTTTCAGATGCAACCCCTGAAGAGCTTAACGCAAGCGATGCTACATGTATTATCTGTCGTGAAGAGACGACTACAGCCAAGAAACTTATATGTGGACATCTTTTTCATGTGCATTGCCTCCGATCATGGTTGGAGCGGCAACATACTTGCCCTGCCTGCAGAGCCTTGGTTGTACCACCTGAAAATGGCGCAACTACTGCTAGAGGGCAGCATGGATCACAGTCAGATCGACAGGGAACAGGAACAGGATAG 1050 0.4238 MVAVSLCIAKMMRLQSYAALSFLATLAVTHHAFNSRGQFYPAMVFRSTSKINLVLLLNMGLVIMCLLWQLTKKVFLGTLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPAVPLLSHIRIVSXMGFLLLLDGLFFYSSVKHLILSWQASVSLFFAFKYMILATTTVSIFVKYLFYVSDMXEGQWERKPVFTFYLELIRDLLHLSMYMCFFLVIFMNFKVRVADYIRYHKITSNMNDRFSDATPEELNASDATCIICREETTTAKKLICGHLFHVHCLRSWLERQHTCPACRALVVPPENGATTARGQHGSQSDRQGTGTG 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1619 351 Pfam Ring finger domain 283 322 IPR001841 -
Prci6g1619 351 MobiDBLite consensus disorder prediction 334 351 - -
Prci6g1619 351 ProSiteProfiles Zinc finger RING-type profile. 284 322 IPR001841 -
Prci6g1619 351 PANTHER RING ZINC FINGER PROTEIN 8 336 - -
Prci6g1619 351 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 256 331 - -
Prci6g1619 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 329 IPR013083 -
Prci6g1619 351 MobiDBLite consensus disorder prediction 332 351 - -
Prci6g1619 351 SMART ring_2 284 321 IPR001841 -
Prci6g1619 351 CDD RING-H2_synoviolin 281 322 - -
Prci6g1619 351 SUPERFAMILY RING/U-box 264 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1619 Prci-Chr6 13161183 13165741 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1619 11 351 C3H Transcription Factor Family AT3G16090 73.611 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1619 K10601 - gmx:100816441 580.867