Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1600 ATGCATAGAAGGTTTCGAAGGTTGGACTCTCGTGTGACATCAAAAACATCATATGCTAGTGATATGAAGAGCTCAAATAAAGCAAAAGCTGCTAAAGTTTTTGGATGTGAAAGAGAAAAAGAAACAGCAGGCAAGGATATCTTGAACAAACTGAGGAGAGTAGATTTGGCAGAGCAAGAATGGGTCGATAAGATTCCAGACTGTCCAGTTTTCTGCCCATCAGAACAGGAGTTTGAGGATCCCTTAGTTTATCTGCAGAAGATTGTTCACGAGTCACAAAAATATGGAATATGCAAAATTGTTTCTCCTATAAATGCCTCTATTCCAGCTGCTGTTGTCCTAATGAAAGAGATAGAAAATTTCAAGTTTGAAACTATTGTACAACCTCTTCAGTTTTCTGAATGGAATGAGGACAATGAAACAATCTATTCCCTCAGAGGCAGAAAATACACTTATCGTGATTTCGAGACTTTGGCGAACAAGGCCTTTCTCAGTCGGTTTTACAGTTCAGGAAGTCTTCCTTCTCCGTATGTGGAAAAGTTATTCTGGCATGAGATGGAGCATGGAGAGATAGGAACAGTTGAGTATGGAGTCAATGTTGAAGGGAGTGCTTTTTCATGTGATCCTGATGACAAGCTTGGGAAAAGCAAATGGAATTTGAAGAATTTCTCCAGGCTGCAGAAATCCACATTGCGGTTCATTGACAGAGAAATTCCAGGAATAACTGATCCCATGCTTTATATTGGAATGCTATTCAGCATGTTTGCATGGCATGTAGAAGATCACTATTTATACAGCATTAACTATCATCACTCAGGAGCAAATAAAACTTGGTATGGTGTTCCCAGCTATGCAGCCTCTCAATTCGAAGAGGTCACCTCAGATCATGTGTTCCACAATAAGATTTTATCAAAGCATGATGGAGAGGCTGGTGCCTTCCAAGCTCTTGCTCATAAAACAACCATGTTTTCTCCAAATGTCTTGATTCAACATGGTGTTCCAGTTTACAAGGTCTTGCAGAAGCCTGGAGAGTTTGTCATCACCTTTCCCAGAGCATATCATGCTGGATTTAGTCATGGATTTAACTGTGGAGAAGCAGTAAACTTTGCAGTGAGTGATTGGTTTCCATTTGGGGCTGAAGCTACAAGGCGATATGCACATCTTGGAAAGATGCCTATTATTCCCTTTGAGGAACTTCTTTGTAATGAAGCAATGCTGATTTACAAGGCCCCAAATTTCAGAGGCTCAAGTGACAAATTTGATTTGCAATCTGACCATGCTACTAAACTGTCTTTTATGCAGCTTATGCAATTTTACTACGGAGCTCTTTCAAGACTGGAAATTTCAAGCGAGTTTTTAAGTTCTTCAAATTCCCTAGGTACTGTGGTATGCAGCCTCTGCAGTAGAGACTGTTATGTGGCTTTCTTTCTCTGCAAGAACTGCTATACTCATCCCATTTGTCTTTTCCACGAAATTGAGACTCAGACTTGTTTATGCGGTAGACCGTGCACACTTTTCAAGAGAGATGAAATGTTGGCACTGATAGATGCTGCCACAAGTTTTGAACTGGAAAAAGACATCATGTTGGAATTCCAGAGAAATAGTGGAGTAAATGTACTGTCAAAGACATTCTTTTATATTGATCAAGAAAGCATTCGAGATAATAAGAACAATCTTTACCATGAAGAAAGAATTACCGGTGGAACTGTTTCTTCTATGGAGAGAGCATCAAGTTCAAAAATAAGAGAAGAGGACTCTATTGAGCTCAACTTGGAATATAATAAGGAGCTAGTGCTGAAAATTTGTGGAAAGAGAGGGCCACCAACAATGATAGATGAGAAGGGAGCTCAAATGAAGTCTAAATTACAAAGAAAATATTCAAATTTTACACAAATTACTCAAACAGAATCTTCCTCAGCTTAA 1923 0.3916 MHRRFRRLDSRVTSKTSYASDMKSSNKAKAAKVFGCEREKETAGKDILNKLRRVDLAEQEWVDKIPDCPVFCPSEQEFEDPLVYLQKIVHESQKYGICKIVSPINASIPAAVVLMKEIENFKFETIVQPLQFSEWNEDNETIYSLRGRKYTYRDFETLANKAFLSRFYSSGSLPSPYVEKLFWHEMEHGEIGTVEYGVNVEGSAFSCDPDDKLGKSKWNLKNFSRLQKSTLRFIDREIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPSYAASQFEEVTSDHVFHNKILSKHDGEAGAFQALAHKTTMFSPNVLIQHGVPVYKVLQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAVSDWFPFGAEATRRYAHLGKMPIIPFEELLCNEAMLIYKAPNFRGSSDKFDLQSDHATKLSFMQLMQFYYGALSRLEISSEFLSSSNSLGTVVCSLCSRDCYVAFFLCKNCYTHPICLFHEIETQTCLCGRPCTLFKRDEMLALIDAATSFELEKDIMLEFQRNSGVNVLSKTFFYIDQESIRDNKNNLYHEERITGGTVSSMERASSSKIREEDSIELNLEYNKELVLKICGKRGPPTMIDEKGAQMKSKLQRKYSNFTQITQTESSSA 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1600 640 SMART JmjN_1 67 108 IPR003349 -
Prci6g1600 640 Pfam JmjC domain, hydroxylase 245 369 IPR003347 -
Prci6g1600 640 SUPERFAMILY Clavaminate synthase-like 146 404 - -
Prci6g1600 640 SMART cupin_9 212 386 IPR003347 -
Prci6g1600 640 ProSiteProfiles JmjN domain profile. 68 109 IPR003349 -
Prci6g1600 640 Pfam jmjN domain 69 101 IPR003349 -
Prci6g1600 640 Gene3D Cupin 68 431 - -
Prci6g1600 640 ProSiteProfiles JmjC domain profile. 215 386 IPR003347 -
Prci6g1600 640 PANTHER LYSINE-SPECIFIC DEMETHYLASE 60 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1600 Prci-Chr6 12934305 12939313 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1600 51 517 JUMONJI Transcription Factor Family AT2G34880 31.801 7.03e-61 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Prci6g1600 JmjC 5.3e-41 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1600 - - pcin:129313895 1295.03