Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1504 ATGGCTGCGGTTGCTGAGATTTCCGTCGACGCAGCAGCTGCGAACAAGTTGGACTCAAAGTCAAAGTCCGAATCCGAATTCAATGTGCAAAAGCTGGTGGATATGTTCACTAAGTTGAATCCTTTGGCGAAGGAGTTCATCCCTTCAAGTTATTCTCACCATGATCATCTCCATCAGGGCTATCATCAGCTCCCACCGACCAATTTTCTGGGTACGGCAGCTGATAGTGATCACCAAAATAATCGAAGGAGAAGAACTAATTATAGCCAGGGGAGGAGAAGGTCCAATGGAAGAGTGCATAAGGGTCAGAGAGAAGATAGCATTAGAAGGACAGTATATGTTTCTGATATAGATCAGCATGTTACTGAGGAGCGGCTTGCTGCCTTATTTTGTACGTGTGGACAAGTTATTGACTGCCGAATTTGTGGTGATCCTCATTCAGTTCTTCGTTTTGCATTTGTGGAGTTCGCAGATGAGCAAGGTGCAAGAGCAGCTTTAAACCTTGGTGGCACTGTGCTTGGGTACTATCCAGTTAGGGTCCTTCCTTCCAAAACTGCTATCCTTCCTGTGAATCCTACTTTCCTCCCTAGGTCTGAGGATGAGCGGGAAATGTGTAGCAGGACTGTCTATTGTACAAATATTGATAAAAAGATTTCTCAAGCTGAAGTGAAGAACTTTTTTGAAACAGCTTGTGGTGAGGTTACCCGCTTGAGGCTATTAGGAGATCATGCTCATTCAACCCGAATTGCTTTTGTGGAATTTGCAATGGCGGAAAGTGCCATTGTTGCACTAAATTGTAGTGGGATGCCCTTGGGAAGCCAGCCTATCAGGGTAAGTCCTTCAAAGACACCGGTGAGGCCAAGAATCCCCCATCCAACACCCCATTAA 888 0.455 MAAVAEISVDAAAANKLDSKSKSESEFNVQKLVDMFTKLNPLAKEFIPSSYSHHDHLHQGYHQLPPTNFLGTAADSDHQNNRRRRTNYSQGRRRSNGRVHKGQREDSIRRTVYVSDIDQHVTEERLAALFCTCGQVIDCRICGDPHSVLRFAFVEFADEQGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKISQAEVKNFFETACGEVTRLRLLGDHAHSTRIAFVEFAMAESAIVALNCSGMPLGSQPIRVSPSKTPVRPRIPHPTPH 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1504 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 174 IPR000504 GO:0003723
Prci6g1504 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 276 IPR000504 GO:0003723
Prci6g1504 295 SMART rrm1_1 111 181 IPR000504 GO:0003723
Prci6g1504 295 SMART rrm1_1 208 279 IPR000504 GO:0003723
Prci6g1504 295 Pfam Ataxin-2 C-terminal region 35 50 IPR009818 -
Prci6g1504 295 CDD RRM1_CID8_like 108 187 IPR034823 -
Prci6g1504 295 MobiDBLite consensus disorder prediction 275 295 - -
Prci6g1504 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 185 IPR000504 GO:0003723
Prci6g1504 295 MobiDBLite consensus disorder prediction 62 105 - -
Prci6g1504 295 CDD RRM2_CID8_like 203 284 IPR034825 -
Prci6g1504 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 283 IPR000504 GO:0003723
Prci6g1504 295 FunFam Polyadenylate-binding protein-interacting protein 10 201 279 - -
Prci6g1504 295 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 35 288 - -
Prci6g1504 295 SUPERFAMILY RNA-binding domain, RBD 75 186 IPR035979 GO:0003676
Prci6g1504 295 FunFam Polyadenylate-binding protein-interacting protein 11 74 187 - -
Prci6g1504 295 SUPERFAMILY RNA-binding domain, RBD 197 288 IPR035979 GO:0003676
Prci6g1504 295 Gene3D - 195 288 IPR012677 -
Prci6g1504 295 Gene3D - 71 186 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1504 Prci-Chr6 11836520 11844608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1504 107 264 Eukaryotic Initiation Factors Gene Family AT1G34140 26.087 1.23e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1504 - - gmx:100818291 473.781