Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1449 ATGGACCCCAGTTATCATGGCTTACCTCCCCTCAAGCGATTCAGACTCATCCAGCAGCAACAAGAGCTCCAGAATCATCAGCCACATCACACTCACAATCACAGATCGCAGGATGAAGCCACCGGCGTTTCCTGCTCAACCTTACCGGCAAAGAAGCGTAAGGAATCGCGAGATTCAACATTTCTTTCAGTCTCTGTCAATGCTTATTCGTTACCAGCTAAGAAACGGGTATGGGCTCTTCAACCTGATTTTGCTTCCGATGTTGGTGTTTCTTCTATTGACCTCAATGTTGAATACAAACCATCGGTTGAGGAAGAAGTAAGATCAGTAGATGATAAGGCCAATGATGCTGAGATTCCATTAGCAGCGAATTCACTCGATGTTGAAAATGAAAATGAAAATGTCAAAGATGTTGTTGAGGATGACGAAGATGGGATTGTGTGTGCTGTATGTCAAAGCACAGATGGGGATCCAGCAGATCCAATCGTTCTCTGTGATGGGTGTGATCTAATGGTTCACGCCTCCTGCTATGGCAATCCACTTGTAAAGGGTATACCAGAAGGCGATTGGTTCTGTGAAAAATGCAGGGTTTCATCGTCTTCTCAATCTAAGAATGATGATGAAAGCAACATTTCTTGTTGCCTCTGTCCTACAAAGGAAGGGGCTATGAAGCCCACTGTAGATGAACGGTGGGCCCATCTTGTGTGTGCACTTTTAGTCCCTGAGGTGTTTTTTAGGGACCCAGAAGGAAGAGAGGGAATTGATTGCTCAAAGGTTCCGAAGAAGAGATGGTCTGAGAAGTGTTATATTTGTGAATCTTCAAATGGATGTTCCATTTTGTGTTCTGAGGTCAAGTGTCCTTTGGCATTTCATGTCACTTGTGGGTTGAAAGAGGATCTTAGCATTGAGTATCGAGAAGGGAAGAAAAGTGCTACCATTGTTGCTGGTTTCTGCAAAAGCCACACTGAACTATGGAAAAAGCAACAGCTATCTGGGAAATACAAAATCGTTGCTGAAGAAAAAAAGTAG 1029 0.4373 MDPSYHGLPPLKRFRLIQQQQELQNHQPHHTHNHRSQDEATGVSCSTLPAKKRKESRDSTFLSVSVNAYSLPAKKRVWALQPDFASDVGVSSIDLNVEYKPSVEEEVRSVDDKANDAEIPLAANSLDVENENENVKDVVEDDEDGIVCAVCQSTDGDPADPIVLCDGCDLMVHASCYGNPLVKGIPEGDWFCEKCRVSSSSQSKNDDESNISCCLCPTKEGAMKPTVDERWAHLVCALLVPEVFFRDPEGREGIDCSKVPKKRWSEKCYICESSNGCSILCSEVKCPLAFHVTCGLKEDLSIEYREGKKSATIVAGFCKSHTELWKKQQLSGKYKIVAEEKK 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1449 342 Pfam PHD-zinc-finger like domain 212 321 - -
Prci6g1449 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 324 IPR013083 -
Prci6g1449 342 ProSiteProfiles Zinc finger PHD-type profile. 145 198 IPR019787 -
Prci6g1449 342 SMART PHD_3 147 196 IPR001965 -
Prci6g1449 342 SMART PHD_3 267 322 IPR001965 -
Prci6g1449 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 201 IPR013083 -
Prci6g1449 342 SUPERFAMILY FYVE/PHD zinc finger 140 198 IPR011011 -
Prci6g1449 342 MobiDBLite consensus disorder prediction 22 59 - -
Prci6g1449 342 PANTHER PHD FINGER PROTEINS 76 322 - -
Prci6g1449 342 ProSiteProfiles Extended PHD (ePHD) domain profile. 210 322 IPR034732 -
Prci6g1449 342 CDD PHD_BRPF_JADE_like 147 195 - -
Prci6g1449 342 Pfam PHD-finger 147 197 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1449 Prci-Chr6 11106540 11108953 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1449 20 341 C2H2 Transcription Factor Family AT3G14740 55.132 3.47e-120 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci6g1449 zf-HC5HC2H_2 1.3e-29 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1449 K11380 - qsa:O6P43_001103 444.506