Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1439 ATGTCTCGTTTTCTCAGCCGAGCGGTCTCGTTTCGGAGGCGCATTATCAACGCAACATCTCCTTCAACGTTTCAATATCTGCTTTGTGTTCAAAGCCAATGGTTTTCTGTAAGGTATGCTAATTCAATCGCGTCAGATGGCCGTTCTTTCACTGCCTCATATCTCATTGACACATGTGGCTTCTCACCCAAACAAGCTGAAGCAGCTTCTATGCGTGTCAGCTTCGAAACGCGAAAAAGGCCAGATTTGGTTATCAATTTCCTGAAAAGTCATGGATTCTCGCGGCCGTTGATTCTTCGTCTCATTCGAAAGGCCCCATGGTTTCTTCGATCTGATCCTGAGAAAACCTTTCTTCCCAGGATTGAATTTTTCAAATCCAGAGGTGTTTCGAGCTCACACATCTCTAAGCTTATTTTTAATTGTCCTAACATCATGAGAAGAAGCTTAAGTAATCAACTCATTCCTTCTTTTGATTTCTTTCGAGATTTGTTTCAATCTGATGAGAATGTCATTAAAGCTCTAGAACATTGCTCGGGCATTTTTTCTGGTACTAGAACCTCTGCCGCGCCAAAAATAGAGATATTGCGAGAAGCAGGAGTTCCTCAATCAAATATCATCAAATATTTGCAATTTTACTCTAGAACATTTACTTCTTCTCGTCCTGGTCGAATTAAGAAGATTGTGGAGGAAGTGAAAGAACTTGGTTTTGATCCTTTGAAGCTTCAATTTCTTGTAGCTGTTCATGTATGCTTATGCTTAAAAAAATCCACACTGGCTAAAAAGGCTGATGTTTATAAGAAGTGGGGTTTTTCTGACCATGACATTCTCACGGTGTTTAGAAAGCATCCTTTGTGTATGGCAATATCAGTGGATAAAATTGATGCAGCAATGGATTTTTTTGTGAATAAATTGGGCTGTGATTCTTCCACTCTTAGCAAATATCCTGCAGTTATTACATTGAGCTTGGAAAAGCGAATTGTTCCACGTGGCGTTGTCATTCAAGTTCTATTGTCAAAGGGTCTGGTGAAAAAGAAGACATTACTTCGAATACTTAAATTAACTGAAAAGGACTTTTTAAGGAGGTTTGTCCTTTGTCATGAGCACGAAGCAAGTGAATTGTTGGAGTTGTATCAGTCTAAACTGGATCTTACAAGGAAAATGAATCGTTGA 1170 0.3932 MSRFLSRAVSFRRRIINATSPSTFQYLLCVQSQWFSVRYANSIASDGRSFTASYLIDTCGFSPKQAEAASMRVSFETRKRPDLVINFLKSHGFSRPLILRLIRKAPWFLRSDPEKTFLPRIEFFKSRGVSSSHISKLIFNCPNIMRRSLSNQLIPSFDFFRDLFQSDENVIKALEHCSGIFSGTRTSAAPKIEILREAGVPQSNIIKYLQFYSRTFTSSRPGRIKKIVEEVKELGFDPLKLQFLVAVHVCLCLKKSTLAKKADVYKKWGFSDHDILTVFRKHPLCMAISVDKIDAAMDFFVNKLGCDSSTLSKYPAVITLSLEKRIVPRGVVIQVLLSKGLVKKKTLLRILKLTEKDFLRRFVLCHEHEASELLELYQSKLDLTRKMNR 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1439 389 PANTHER CGI-12 PROTEIN-RELATED 47 367 IPR003690 GO:0003690|GO:0006355
Prci6g1439 389 Pfam mTERF 85 237 IPR003690 GO:0003690|GO:0006355
Prci6g1439 389 Pfam mTERF 223 359 IPR003690 GO:0003690|GO:0006355
Prci6g1439 389 FunFam Mitochondrial transcription termination factor-like 149 370 - -
Prci6g1439 389 SMART mt_12 241 271 IPR003690 GO:0003690|GO:0006355
Prci6g1439 389 SMART mt_12 135 166 IPR003690 GO:0003690|GO:0006355
Prci6g1439 389 SMART mt_12 171 201 IPR003690 GO:0003690|GO:0006355
Prci6g1439 389 SMART mt_12 206 237 IPR003690 GO:0003690|GO:0006355
Prci6g1439 389 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
Prci6g1439 389 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Prci6g1439 389 SMART mt_12 308 342 IPR003690 GO:0003690|GO:0006355
Prci6g1439 389 Gene3D Transcription termination factor 3, mitochondrial 59 186 IPR038538 -
Prci6g1439 389 Gene3D Transcription termination factor 3, mitochondrial 187 375 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1439 Prci-Chr6 11065118 11068685 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Prci6g1439 mTERF 5.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1439 K15031 - qsa:O6P43_003531 355.525