Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1438 ATGTCTTGTTTACTCAGCAGAGCCATTCCTTTTCGGAGGCAGATCATCAACGCTATCTCTCCCTCAACATTTCAACATCAGCTTTGTCTTCAAACCCAGTGGTTTTCTGTGCGGTACGCTAACACAAACGCCTCTAATGGGAAATCTTTCACCGTCTCATATCTCATTGAAACCTGTGGTTTCTCGCCCAAAGAAGCTGAAGCAGCTTCTAAGCGTGTCAGCTTCGAAACGAGGGAGAAGCCTGATTTGGTTATCAAGTTCCTGAAAAGTCAAGGATTCTCACAGCGCCAGATTCTTCGTTTCATTAGACGGGTCCCAGAGTTCCTTCGATTTGATCCTGAGAAAACCTTTCTGCCCAAGATTGAATTTTTCAAATCCAGAGGCATTTCGAGCTCACACATCGTTGCGTTCATTTGTAGTTGTCCTTGTATCATGAGAAGAAGCTTAAGTAAGCATCTCATTCCTTCCTTCGATTTCTTTCAAGATCTGTTTCAGTCGGATGACAAGCTCATTAAAGCTCTTCGATATTGCTCGGGCATTCTTCTTGATACCAACAAACGTGCCGTGCCTAATATGAAGCTATTGCGAGAAGCAGGAGTTCCTGAATCAAATGTCATCAAATTGTTGCAGTTTGTTCCTAAGACATTAACTGGAAATCCTAATCAATTTAAGGAGATTCTGGAAAAAGTGAAGGAAATAGGGATTAATCCTTTGAAGTATCAATTTCTCATGGCTGTTCATCTGTACTCATCCTTAAGCAAATCCAACTTGGCAAAAAGGGCTGAAGTTTATAAGAAGTGGGGCTGGTCTGACGATGATATTCTCGCGGCATCTAGAAAGTTCCCCTTGTGTATGATAGCGTCAGAGGATAAGATTGATGCAATAATGGAGATTCTTGTCCATAAATTGGGCTGTGATCCTTCCGCTATTAGCAGCACATATCCTAATGTTTTGGGATATAGTTTGAACAAACGAATTGTTCCAAGAAGTGCTGTCCTTCAAGTTCTGTTGTCAAAGGGTCTGACGAAAAGAAAAACTTTGCTCTCAACATTTCTATACACGGAAAAGGACTTTTTAAGGAGGTTTGTCCTTTGTCATGGGCAAGAATCTAATGCGTTATTGGAGTTGTATCGCACAAAACTGGATCAAGCAAAGTGA 1158 0.4136 MSCLLSRAIPFRRQIINAISPSTFQHQLCLQTQWFSVRYANTNASNGKSFTVSYLIETCGFSPKEAEAASKRVSFETREKPDLVIKFLKSQGFSQRQILRFIRRVPEFLRFDPEKTFLPKIEFFKSRGISSSHIVAFICSCPCIMRRSLSKHLIPSFDFFQDLFQSDDKLIKALRYCSGILLDTNKRAVPNMKLLREAGVPESNVIKLLQFVPKTLTGNPNQFKEILEKVKEIGINPLKYQFLMAVHLYSSLSKSNLAKRAEVYKKWGWSDDDILAASRKFPLCMIASEDKIDAIMEILVHKLGCDPSAISSTYPNVLGYSLNKRIVPRSAVLQVLLSKGLTKRKTLLSTFLYTEKDFLRRFVLCHGQESNALLELYRTKLDQAK 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1438 385 FunFam Mitochondrial transcription termination factor-like 149 370 - -
Prci6g1438 385 Gene3D Transcription termination factor 3, mitochondrial 166 375 IPR038538 -
Prci6g1438 385 Pfam mTERF 85 236 IPR003690 GO:0003690|GO:0006355
Prci6g1438 385 Pfam mTERF 251 358 IPR003690 GO:0003690|GO:0006355
Prci6g1438 385 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
Prci6g1438 385 SMART mt_12 171 201 IPR003690 GO:0003690|GO:0006355
Prci6g1438 385 SMART mt_12 275 306 IPR003690 GO:0003690|GO:0006355
Prci6g1438 385 SMART mt_12 308 342 IPR003690 GO:0003690|GO:0006355
Prci6g1438 385 SMART mt_12 206 236 IPR003690 GO:0003690|GO:0006355
Prci6g1438 385 SMART mt_12 135 166 IPR003690 GO:0003690|GO:0006355
Prci6g1438 385 PANTHER CGI-12 PROTEIN-RELATED 47 366 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1438 Prci-Chr6 11060330 11062785 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Prci6g1438 mTERF 1.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1438 K15031 - qsa:O6P43_003532 343.969