Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1435 ATGTCTCGTTTTATCCGCAGAGCCATCCATTTTCGGAGGCATATTATCATCGAAATTTATCCTTCAACATTTCAACATCTGATTTGTGTTCAACCCCAATGGTTTTCTGTTAGGTACGCTTCTTCAACCTCGTCGAATGGGCATTCTTTCACCGTCTCTTATCTCATTCACGCCTGTGGCTTGTCACCCAAACAAGCTGTTTCAGCTTCCAAGCGTGTCAGCTTCGATACGCGAGATAAGCCAGATTTGGTTATCAATTTCCTGAAAAGTCATGGATTCTCACGGCCCCAGATTATTGGTTTCATTAAACAGGTCCCAGAGTTTCTTCGATCTGATCCTGAGAAAACCTTTCTGCCCAAGATTGAATTTTTCAAATCAAGGGGCGTTCCGACCTCACACATCCCTAGGCTCGTATGTAGTTATCCTCAGATCATGTCAAGAAGCTTAACGAAGCAGCTCATTCCTTCCTTTGACTTCTTTCGAGATGTGTTTCAATCTGATGAGAATCTCGTTAAAACTCTTCGATATTGCTCGGGCATTCTTCTTGATATCAACACACGTGCCGTGCCTAATATGCAGCTATTGCGAGGAGCAGGAGTTCCTGAATCAAATGTCATCAAGTTGTTGCAGTATTTTCCTAGGGCATTAACTTACAGTCCTAATCAATTTAAGAGCATCGTGGAAAGAGTGAAGGAAATCGGGATTAATCCTTTGAAGTTTCAATTTCTTATGGCTGTTCATGTATACTCATCCTTCAGCAAATCCACATTGGCGAAAAAGGCTGATACTTATAAGAAGTGGGGTTGGTCTGACAATGATATTCTCGCAGCATTTAGAAGGTACCCCTTCTGCATGACTGTGTCAGAGGATAAGCTTGATGCAGCATTGGAATTTCTTGTCCATAATTTAGGCTGTGATTCTTCCGTTATTAGTACATATCCTATTGTTTTGGCGTACAGTTTGAGAAAACGAATTGTTCCAAGAGGTGCTGTTCTTCAAGTTCTCTTGTCAAAGGGTCTGGTGAAAAGCAAAACTTTGCTTGCAACATTTGCATATACGGAAAAGGTCTTTTTAAGGAGGCTTGTCCTTTGTCATGGGCAAGAAGCTAATGAGTTATTGGAGTTGTATCGTACAAAACTGGATCAAGCAAAGTGA 1155 0.4139 MSRFIRRAIHFRRHIIIEIYPSTFQHLICVQPQWFSVRYASSTSSNGHSFTVSYLIHACGLSPKQAVSASKRVSFDTRDKPDLVINFLKSHGFSRPQIIGFIKQVPEFLRSDPEKTFLPKIEFFKSRGVPTSHIPRLVCSYPQIMSRSLTKQLIPSFDFFRDVFQSDENLVKTLRYCSGILLDINTRAVPNMQLLRGAGVPESNVIKLLQYFPRALTYSPNQFKSIVERVKEIGINPLKFQFLMAVHVYSSFSKSTLAKKADTYKKWGWSDNDILAAFRRYPFCMTVSEDKLDAALEFLVHNLGCDSSVISTYPIVLAYSLRKRIVPRGAVLQVLLSKGLVKSKTLLATFAYTEKVFLRRLVLCHGQEANELLELYRTKLDQAK 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1435 384 PANTHER CGI-12 PROTEIN-RELATED 46 365 IPR003690 GO:0003690|GO:0006355
Prci6g1435 384 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
Prci6g1435 384 SMART mt_12 240 270 IPR003690 GO:0003690|GO:0006355
Prci6g1435 384 SMART mt_12 307 341 IPR003690 GO:0003690|GO:0006355
Prci6g1435 384 SMART mt_12 135 167 IPR003690 GO:0003690|GO:0006355
Prci6g1435 384 SMART mt_12 206 236 IPR003690 GO:0003690|GO:0006355
Prci6g1435 384 SMART mt_12 275 306 IPR003690 GO:0003690|GO:0006355
Prci6g1435 384 FunFam Mitochondrial transcription termination factor-like 149 369 - -
Prci6g1435 384 Gene3D Transcription termination factor 3, mitochondrial 166 374 IPR038538 -
Prci6g1435 384 Pfam mTERF 85 236 IPR003690 GO:0003690|GO:0006355
Prci6g1435 384 Pfam mTERF 182 357 IPR003690 GO:0003690|GO:0006355
Prci6g1435 384 Coils Coil 366 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1435 Prci-Chr6 11054043 11059266 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Prci6g1435 mTERF 8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1435 K15031 - qsa:O6P43_003531 369.392