Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1403 ATGTCGTCGACATCTTCCTCCTACGAACTTGTCCTTACTAGCTCTCCTGATGGTCCCATCGTTGCCTATGATGCTTCCACCGGAGCTGCAGTCGCTCGCTTCCCGGGCACCCGGTCGCCCCGTGGCGGCCTCACTGTGGCCGGAAACTGCTTCATCGCTGGGTGCCATGTGTCACCGCACACGGCGGCTGTTTCGATTCACCTCTACAACTGGCACACTTGGAGTGTGCTTCACAGGTTCTCGGTGCCTGAATTTGTGGCCCCACTTGCTGCTACTGCCGACGGCGGCTATCTCTTCGCCGGAGGCCAGTCAGGGAGCATCCATTGCTTCTCAGTTCCTTCTGGGGATGTGGTCAAGTCCTTTCCTGCTCACGCCAAACCCATTTCTTGTCTCCAACTTAGCAATGATGGCTCATTGGTCATTTCAGGCAGTGATGATGGCAGCATTACAGTAATCCCAACATTTCAGCTGGTAGAATCATCAGACTCAAACCCAAAAGACTTGATTCTGCACCATTTCAACGCACATTCTGATTCAATCACAGCCTTCAGCACCGGACTCGGTCTTCTATGCAACTCCATACTCGTCTCATCCTCACTAGATTCCACCTGCAAGTTCTGGAATCTTCTAGAAGGCACCCATCTTCGCACAATGACCTTCCCTTGTCCCATAAACGGGGTGGCCATCTCAAACTCGACATCAGACTCACACTACTTCTTTGCCGCTGGGTCAGACGGATCGGTTTACAAAGGATCAACGAAGAAGGCTCAAGAACTGGTGAGGAAGTGGAATCAAAGCCACGTGGGGCCCATTGTATCAGTGGTTCTGGTGAATGAGGGGAGGAATCTGGTGTCTGCAGGTGAAGATGGTAGTGTGTGGATGTGGAAGGTTGGGACAGAAGAAGTAATAATGGAGATAGGAAATAACAATGCAGGAAGCATCAGTGACATGATAGTGGCTAGAGGGACGAGTGAGTATAGAGGGAAGAGTAATAGCGATGGTGAAGGTGATGATGAGAATAATAATAGGTTTAGCAGTTCATGGATGTTGAATAATAATGAAGAAGTGATGAGATCAATGAAGAAGATAATGGAGGTTGGAGATGTACTGAGTGTGGTGGAGGAAGACAAGAAGAAAGCCATAAAAATGCTGGAATCTGCAATTGCTATGTATGAGAGGCTCTTGGAGCTCATACTTGAGGAGGCTTTGAAAGGTTCTGCTGATGACAGTGATGAAGAAGAAGATGAGGAAGATGAGAAAGATGACAAGTAA 1272 0.4882 MSSTSSSYELVLTSSPDGPIVAYDASTGAAVARFPGTRSPRGGLTVAGNCFIAGCHVSPHTAAVSIHLYNWHTWSVLHRFSVPEFVAPLAATADGGYLFAGGQSGSIHCFSVPSGDVVKSFPAHAKPISCLQLSNDGSLVISGSDDGSITVIPTFQLVESSDSNPKDLILHHFNAHSDSITAFSTGLGLLCNSILVSSSLDSTCKFWNLLEGTHLRTMTFPCPINGVAISNSTSDSHYFFAAGSDGSVYKGSTKKAQELVRKWNQSHVGPIVSVVLVNEGRNLVSAGEDGSVWMWKVGTEEVIMEIGNNNAGSISDMIVARGTSEYRGKSNSDGEGDDENNNRFSSSWMLNNNEEVMRSMKKIMEVGDVLSVVEEDKKKAIKMLESAIAMYERLLELILEEALKGSADDSDEEEDEEDEKDDK 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1403 423 SMART WD40_4 114 153 IPR001680 GO:0005515
Prci6g1403 423 SMART WD40_4 73 111 IPR001680 GO:0005515
Prci6g1403 423 SMART WD40_4 256 296 IPR001680 GO:0005515
Prci6g1403 423 SMART WD40_4 166 208 IPR001680 GO:0005515
Prci6g1403 423 SMART WD40_4 211 252 IPR001680 GO:0005515
Prci6g1403 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 217 IPR001680 GO:0005515
Prci6g1403 423 PANTHER WD-REPEAT PROTEIN 18 9 402 IPR045227 -
Prci6g1403 423 Gene3D - 221 324 IPR015943 GO:0005515
Prci6g1403 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 121 151 IPR001680 GO:0005515
Prci6g1403 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 297 - -
Prci6g1403 423 ProSitePatterns Trp-Asp (WD) repeats signature. 195 209 IPR019775 -
Prci6g1403 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Prci6g1403 423 Coils Coil 381 401 - -
Prci6g1403 423 MobiDBLite consensus disorder prediction 406 423 - -
Prci6g1403 423 MobiDBLite consensus disorder prediction 325 346 - -
Prci6g1403 423 Pfam WD domain, G-beta repeat 116 149 IPR001680 GO:0005515
Prci6g1403 423 Pfam WD domain, G-beta repeat 170 208 IPR001680 GO:0005515
Prci6g1403 423 MobiDBLite consensus disorder prediction 402 423 - -
Prci6g1403 423 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 9 301 IPR011047 -
Prci6g1403 423 Gene3D - 2 220 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1403 140 294 Eukaryotic Initiation Factors Gene Family AT2G46290 25.000 1.64e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1403 K14829 - qsa:O6P43_029232 414.075