Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1400 ATGGCTCTGCTCTGTGGTTCATCTTCAGTGGCATTCCTTTCATCTTCTGCTAAGCCTTCCTATGCTTGTTCCCGTGATGCGAATGCCAAAACCGCATTTCTTGGGTTCCAATTGGCATCCTCAAAGCCTTCTATACCGACCAATTCGCGCCTCAATTCTAGGTCAAGTTCTCTAGTGCGTTGCCAGGATCTCTCCATTATCCCAAAAGATGAACGCTGGATGTTCGAGGAATCCGAAGTCAATGGGCCGGACATTTGGAACAAGACATGGTATCCAAAAGCAGCAGATCATGTAAACACAGATAAACCATGGTACATTGTCGATGCTACAGATAAAATTCTTGGAAGACTAGCATCAACTATTGCAATTCATATCCGAGGGAAAAATTTGGCAACCTATACTCCCAGTGTGGACATGGGTGCATTTGTAATTGTGGTTAATGCAGAAAAGGTCGCTGTATCTGGAAAGAAGAGGACCCAAAAGCTTTATAGGAGGCATTCAGGACGACCTGGTGGTATGAAAGTAGAGACATTTGCCCAACTACAGGCGAGAATTCCTGAAAGAATTATTGAACATGCTGTTCGTGGCATGCTTCCAAAAGGGAGGCTTGGCAGACAACTGTTCAACCACCTGAAGGTTTACAAGGGCCCTGATCATCCACATCAAGCCCAAAAACCCATTGAGTTACCAATAAGGGACAAAAGAATACAAAGGCAGGGGTAG 723 0.4495 MALLCGSSSVAFLSSSAKPSYACSRDANAKTAFLGFQLASSKPSIPTNSRLNSRSSSLVRCQDLSIIPKDERWMFEESEVNGPDIWNKTWYPKAADHVNTDKPWYIVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFAQLQARIPERIIEHAVRGMLPKGRLGRQLFNHLKVYKGPDHPHQAQKPIELPIRDKRIQRQG 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1400 240 ProSitePatterns Ribosomal protein L13 signature. 194 216 IPR023563 GO:0003735|GO:0005840|GO:0006412
Prci6g1400 240 PANTHER RIBOSOMAL PROTEIN L13 90 236 IPR005822 GO:0003735|GO:0005840|GO:0006412
Prci6g1400 240 SUPERFAMILY Ribosomal protein L13 98 232 IPR036899 GO:0003735|GO:0005840|GO:0006412
Prci6g1400 240 Hamap 50S ribosomal protein L13 [rplM]. 104 230 IPR005822 GO:0003735|GO:0005840|GO:0006412
Prci6g1400 240 Gene3D Ribosomal protein L13 93 236 IPR036899 GO:0003735|GO:0005840|GO:0006412
Prci6g1400 240 Pfam Ribosomal protein L13 103 220 IPR005822 GO:0003735|GO:0005840|GO:0006412
Prci6g1400 240 CDD Ribosomal_L13 104 217 IPR005822 GO:0003735|GO:0005840|GO:0006412
Prci6g1400 240 FunFam 50S ribosomal protein L13 87 231 - -
Prci6g1400 240 NCBIfam 50S ribosomal protein L13 98 229 IPR005823 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1400 Prci-Chr6 10472934 10477516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1400 106 230 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 30.303 1.85e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1400 K02871 - qsa:O6P43_001091 404.06