Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1393 ATGAAGCCACCAAAGTTACGTTATAGCAGTATCATGAAGATAATTACTTTCCCTCATCATCACCTCTTTCTCCTGATGATCTCTCTTTTCTGGGCTTCTTCTGCATTTGGAGCCACCAAGATACATCCATCTGAAATGGAAGCTCTGAAAGACATAGCTAAGACACTTGGGAAGACAGACTGGAACTTCAGCATAGATCCATGCGATACGCCATCTGCAGTCCAGAGCAGCTGGTTTACGCCAAACCCAGTCGATAAAGAAAGTCAAAACGCTGTCGTCTGCAATTGCACCCTTGCCAATGACAGCTTCTGTCATGTTGTCAACATAACTTTGAAGAAACAAAGTCTCCCGGGCAAACTCCCGCCAGAACTCGTCAGATTATCTTACCTTTCCATAATCGACCTGAGCCGCAACTACCTTAGCGGTTCAATCCCTTCTAGTTGGGCCTACCTTAAACTTGTGCACATTTCTCTTCTTGGTAACCGACTAACGGGTAGAATCCCAGTGGAGCTTACGAAGATCACTACTCTGCAGCGTTTGGTCCTCGAGTTCAATCAATTTTATGGAAATCTTCCTCCTGAGCTTGGCAATCTTCGCTATATTGAAGGACTGCTTCTTACCTCCAACAACTTCACTGGAGAAATACCTTCAACTTTCGCAAACCTCACTACGTTGACGGATATTCGACTAGGTGACAATCAATTCTCTGGAAAGATGCCTAGCTTTATTCAGAACTGGAAAAGTCTTGAGACAATAGTGGCTCAAGGGAGTGGTTTGAGTGGACCCATTTCTGGAATTTCATTTCCGGAAAACTTAAAACTGTTGACGATAAGTGACTTGAATGGACCTGATTCAACTTTTCCCGCACTCAATAATTTGACAAAATTGAAATCATTGATATTGAGGAGTTGCAATATCATTGGAAAGATACCTCCCTCTCTTGGGAGCATGGGCAATTTAAAAATCTTAGACCTGAGCTTTAACAAATTGCAAGGAAAAATTCCAGATACCTTTTCTCACCTCTCACAAACGGATGACATGTATTTAACTGGAAACTTTCTCGATGGACCTGTGCCTGCGTTGAACAAAGTTGAATACGTGGATCTTTCATACAACAACTTTTCCAGCAGAGACACTGGGGGGAGGTGTGATCGATCAAATGTGAACCTGTTTGGAGACTCTTTGACGGTCAATGACTCAGGATCTGTTACTTGTATGAGAAGCCCTTGTTCTAAAACCTGGTACTCTGTCAATATAAATTGTGGTGGAAAAGCTGGCACCTTTGAAGGTAAAATGTATGATGGTGATTTGGATCTAGCTTCACGAGGATTTGCAAAAAGTGGAACAAACTGGGCAATTAGCAATACTGGTCACTTTATAGATGCAAGACGAAAGTATACCTACATCGCAGAAAGCAATAGTCTCCCTTTGCCCAATGTTGAACTGTATGGGAATGCACGTCTTTCCCCTATTTCTCTGACCTATTATGTATTTTGCCTGGGAAATGGACCGTACACAGTGAGTCTTCATTTTGTGGAGATAGTGTTCACTGATGATCAAACATATAGAAGCCTTGGAAGGCGTGTATTTGATGTCTACATTCAGGGAAAGCGAATGCTGAAGGATTTCAATATTGTAAATGAAGCAGGGGGAGCTGGTAAGCTAATTGTAAGAAATTTTACTGTAAATGTGACTAGTGGCACCTTAGAGATTCGCTTCTCTTGGGCTGGGAAAGGGACAACTGCTATACCGGAAAAGTCAGTTTATGGTCCTTTAATTTCAGCTATATCTGTAACTTCTGCAGACTTTAAACCCCCAAGAAGCATGCCTGGAGCAGTTGTGGCTGCAATTGTGGCTGCAGGAGTGAGTATTGTCATCCTGATACTGGGCATGCTCTGGTGGAGAGGTATCCTAGGAAAAAGAAGTTCGTTAGCAATAGAGCTAAAGAGCTTAGATCTACAAACTGGTTCGTTTACCTTGCGCCAAATCAAAGCAGCAACAAATAACTTCGATGCATCTAATAAGATTGGAGAAGGAGGATTTGGTTCTGTTTACAAGGGCTTTCTATCAGATGGCACAATGATAGCAGTGAAGCAGCTTTCTTCTAAATCAAAACAAGGAAACCGTGAGTTTATAAATGAGATAGGCATGATCTCTGCTTTGCAACACCCTTGTCTTGTTAAGCTCCATGGTTGTTGTGCTGAGGGGGATCAGTTGTTGCTGGTGTATGAATACATGGAAAACAACAGCCTTGCTCGTGCCTTGTTTGGACCAGAAGAATGCCGTTTAAAATTGGATTGGCCAACAAGACAGAAGATTTGTGTTGGTATTGCCAGAGGTTTGGCTTTCCTCCATGAAGAATCAAGACTAAAGATTGTTCACCGGGACATCAAGGCCACTAATGTGCTACTTGACAAAGACCTGAATGCAAAAATTTCTGATTTTGGACTCGCGAAGCTTGATGAAGAGGAAAATACCCACATAAGCACTCGAATAGCTGGGACCTATGGATATATGGCACCTGAATATGCAATGCATGGTTATTTGACTGACAAAGCAGATGTCTATAGTTTTGGAATTGTTGCCTTGGAAATTGTAAGTGGAAGGAGTAACACTTATCGCAGACAAAAGGAAGACTGTTTCAATCTTCTTAATTGGGCACATGTTTTGAAAGAGAATGACTATTTAATGGAGCTCGTTGATCCAAGGTTGGGTTCAGATTTTAACAGGGAAGAGGTAATGGTGATGATCAATGTGGCTCTTCTATGCACTAATCCCTCTTCATCATTGAGGCCCCCCATGTCTTCTGTCCTAAGCATGCTTGAAGGCAGGACTGTAGTTGCCGAGTTCATTTCCGATCAAAGTGTGGAAACAAGCAAGATGAAGTTAGAGACAACGAGACAATATTACCGACAGATAGAAGAAAATCAGACAAATGATGAGACTGAAACTCATTCTCAGAGTCTGTTAGGAATGTCCACTTCTTCATCCACATCAGCTAGAGATCTCTATCCTGTTCGCCTAGATTCTTCCTACTTGGAGAAAAGAAAGTCTGACAGGATAGGCTAA 3069 0.421 MKPPKLRYSSIMKIITFPHHHLFLLMISLFWASSAFGATKIHPSEMEALKDIAKTLGKTDWNFSIDPCDTPSAVQSSWFTPNPVDKESQNAVVCNCTLANDSFCHVVNITLKKQSLPGKLPPELVRLSYLSIIDLSRNYLSGSIPSSWAYLKLVHISLLGNRLTGRIPVELTKITTLQRLVLEFNQFYGNLPPELGNLRYIEGLLLTSNNFTGEIPSTFANLTTLTDIRLGDNQFSGKMPSFIQNWKSLETIVAQGSGLSGPISGISFPENLKLLTISDLNGPDSTFPALNNLTKLKSLILRSCNIIGKIPPSLGSMGNLKILDLSFNKLQGKIPDTFSHLSQTDDMYLTGNFLDGPVPALNKVEYVDLSYNNFSSRDTGGRCDRSNVNLFGDSLTVNDSGSVTCMRSPCSKTWYSVNINCGGKAGTFEGKMYDGDLDLASRGFAKSGTNWAISNTGHFIDARRKYTYIAESNSLPLPNVELYGNARLSPISLTYYVFCLGNGPYTVSLHFVEIVFTDDQTYRSLGRRVFDVYIQGKRMLKDFNIVNEAGGAGKLIVRNFTVNVTSGTLEIRFSWAGKGTTAIPEKSVYGPLISAISVTSADFKPPRSMPGAVVAAIVAAGVSIVILILGMLWWRGILGKRSSLAIELKSLDLQTGSFTLRQIKAATNNFDASNKIGEGGFGSVYKGFLSDGTMIAVKQLSSKSKQGNREFINEIGMISALQHPCLVKLHGCCAEGDQLLLVYEYMENNSLARALFGPEECRLKLDWPTRQKICVGIARGLAFLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGRSNTYRRQKEDCFNLLNWAHVLKENDYLMELVDPRLGSDFNREEVMVMINVALLCTNPSSSLRPPMSSVLSMLEGRTVVAEFISDQSVETSKMKLETTRQYYRQIEENQTNDETETHSQSLLGMSTSSSTSARDLYPVRLDSSYLEKRKSDRIG 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1393 1022 CDD STKc_IRAK 676 943 - -
Prci6g1393 1022 Gene3D Ribonuclease Inhibitor 42 278 IPR032675 -
Prci6g1393 1022 SUPERFAMILY Protein kinase-like (PK-like) 654 959 IPR011009 -
Prci6g1393 1022 Pfam Protein tyrosine and serine/threonine kinase 673 894 IPR001245 GO:0004672|GO:0006468
Prci6g1393 1022 ProSiteProfiles Protein kinase domain profile. 670 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1393 1022 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672|GO:0006468
Prci6g1393 1022 Gene3D Ribonuclease Inhibitor 279 413 IPR032675 -
Prci6g1393 1022 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 47 215 - -
Prci6g1393 1022 Pfam Leucine rich repeat 295 352 IPR001611 GO:0005515
Prci6g1393 1022 Gene3D Transferase(Phosphotransferase) domain 1 746 965 - -
Prci6g1393 1022 SUPERFAMILY L domain-like 100 359 - -
Prci6g1393 1022 MobiDBLite consensus disorder prediction 982 1002 - -
Prci6g1393 1022 ProSitePatterns Protein kinases ATP-binding region signature. 676 698 IPR017441 GO:0005524
Prci6g1393 1022 Gene3D Phosphorylase Kinase; domain 1 638 745 - -
Prci6g1393 1022 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 639 745 - -
Prci6g1393 1022 FunFam Putative LRR receptor-like serine/threonine-protein kinase 746 953 - -
Prci6g1393 1022 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 24 976 - -
Prci6g1393 1022 Gene3D - 414 602 - -
Prci6g1393 1022 SMART serkin_6 670 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1393 1022 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 414 601 - -
Prci6g1393 1022 Pfam Malectin domain 416 596 IPR021720 -
Prci6g1393 1022 MobiDBLite consensus disorder prediction 973 1002 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1393 Prci-Chr6 10418839 10430360 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1393 29 1000 Receptor kinase-like Gene Family AT1G53420 52.893 0.0 973
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Prci6g1393 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1393 - - qsa:O6P43_001072 1251.5