Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1353 ATGTCTCTGAGAAGCCTTTTTAGCTCTCGGAAATTCTGTAGATCCTTCAAGGAGGTTAGGGCGATCGAGGAAGATGAGCGGAAGGGGCGGCTTGCCGGTGATTCCGACTACCGCGGTGACTCCACGGACTCTCCGCCCTACGGCGATTCGTGGGCCACTATGCTGCCGGAGCTTCTCGGGGAGATCCTTTCTCGTGTTGAGGCCTCCGAGGATCAGTGGCCCAACCGCCGAAACGTCGTTGCTTGCGCCTGCGTGTGCAAGCGGTGGAGGGATATCACTAAGGAGATCGTGCGCTTCCCTTCGCGCAACGGCGGCAGAATTACCTTTCCTTCTTGCCTTAAGCAGCCTGGACCATGTGACTCACCCCACCAATGTATTATAAAGAGGAACAAGAAGACTTCGACATTTTACCTATATCTTGCCCTTATTCCTCCATCATTCACAGATACGGGTAAGTTTCTCTTGGCAGCTAAGAGATATAGACGTGGTTCTGGTATCGAATATATACTTTCACTTGATGCTGATGACATATCGCAAGGAAGTAATGCCTATGTTGGAAAGTTAAGCTCAGATTTTCTTGGCACGAACTTCACAATCTATGATAGCCAGCCGCCCCATTGTGGCGCAAGGCCATCAAATGGCAGGGCCAGCCGTCGAATTGCATGCAAACAAATAAGCCCTCAAGTTCCTGCTGGTAACTTTGAGGTGGGGCAGGTATCGTACAAGTTCAACCTTTTGAAGTCAAGAGGGCCAAGGAGGATGATTTGCTCACTGAAGTTCCCAAACCAATCATCAGGAGAAAGTTCAGATAGCAGATCTCTGGATGTTCACAAGACGAAAAATGCAGAATATGCTGACTCTGAATACTCAATCTTGAAAAACAAAGCTCCGAGGTGGCACGACCATTTGCAATGCTGGTGCTTAAATTTCCATGGCCGGGTGACTATAGCATCGGTGAAGAACTTTCAGCTGGTTGCTACAGTGGACCGAAGCCAACCAGGAGGGAAAGGAGTTGAGGAAACAGTTCTTCAATTCGGGAAAGTAGGGGATGATACTTTCACTATGGATTACAGGAAGCCACTCTCTGCATTTCAGGCCTTTGCCATTTGCCTAACTAGCTTTGGCACTAAACTGGCTTGTGAGTGA 1146 0.4895 MSLRSLFSSRKFCRSFKEVRAIEEDERKGRLAGDSDYRGDSTDSPPYGDSWATMLPELLGEILSRVEASEDQWPNRRNVVACACVCKRWRDITKEIVRFPSRNGGRITFPSCLKQPGPCDSPHQCIIKRNKKTSTFYLYLALIPPSFTDTGKFLLAAKRYRRGSGIEYILSLDADDISQGSNAYVGKLSSDFLGTNFTIYDSQPPHCGARPSNGRASRRIACKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMICSLKFPNQSSGESSDSRSLDVHKTKNAEYADSEYSILKNKAPRWHDHLQCWCLNFHGRVTIASVKNFQLVATVDRSQPGGKGVEETVLQFGKVGDDTFTMDYRKPLSAFQAFAICLTSFGTKLACE 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1353 381 PRINTS Tubby superfamily signature 338 357 IPR000007 -
Prci6g1353 381 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Prci6g1353 381 PRINTS Tubby superfamily signature 292 309 IPR000007 -
Prci6g1353 381 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Prci6g1353 381 PRINTS Tubby superfamily signature 310 326 IPR000007 -
Prci6g1353 381 PRINTS Tubby superfamily signature 359 381 IPR000007 -
Prci6g1353 381 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Prci6g1353 381 Pfam Tub family 113 376 IPR000007 -
Prci6g1353 381 ProSitePatterns Tub family signature 1. 310 323 IPR018066 -
Prci6g1353 381 Gene3D Tubby Protein; Chain A 108 381 IPR025659 -
Prci6g1353 381 Gene3D - 48 97 - -
Prci6g1353 381 CDD F-box_AtTLP-like 51 95 - -
Prci6g1353 381 Pfam F-box domain 56 98 IPR001810 GO:0005515
Prci6g1353 381 ProSitePatterns Tub family signature 2. 366 381 IPR018066 -
Prci6g1353 381 SUPERFAMILY Tubby C-terminal domain-like 104 381 IPR025659 -
Prci6g1353 381 PANTHER TUBBY-RELATED 49 379 - -
Prci6g1353 381 SUPERFAMILY F-box domain 48 95 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1353 Prci-Chr6 9890776 9893929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1353 33 381 TUB Transcription Factor Family AT1G53320 71.468 0.0 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Prci6g1353 Tub 1.6e-95 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1353 K19600 - qsa:O6P43_029189 594.734