Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1307 ATGGATCCCACCAAGAAGCGAAAGCTCGATGACAACGGCGTCGTCCCTCCCGATTCCGATTTAAACCTCACTCCTTCCGACGCACGCAAAATCATTGAGCGCTTCAGCCCGGAGCAGCTCATCGATGTTCTCCAGGAAGCCGTCGTTCGCCACGCTGACGTCCTCGACGCCGTGCGGTCTATCGCAGACCCTGACGTCACCCAGCGCAAGCTGTTTATCCGTGGTCTTGGGTGGGAGACCACTACTGATGGCCTCCGCTCCCTCTTTTCCACCTATGGCGAGCTTGAAGAAGCCATTGTGATTCTTGATAAGGCCACCGGGAAGTCTAAGGGCTATGGGTTTGTCACCTTCAAGCACGTTGATGGCGCTTTGCTTGCGCTGAAGGAGCCCAGCAAGAGGATAGATGGTCGCGTTACCGTGACGCAGCTTGCAGCGGCCGGGAATACGGGATCAAATACCAATGCTGCCGACATAGCGATGCGGAAGATATATGTCGCGAATGTGCCGTCCGATCTACCGGCCGATAAATTGTTGGCTCACTTCTCACTTTATGGAGAGATTGAGGAGGGGCCGTTAGGATTTGATAAGCAGACTGGTAAGTCGAAGGGTTTTGCTCTTTTCGTGTACAAGACGCCAGAGGGCGCGCAAGCGGCACTTGTTGATCCGGTGAAGATGGTGGAGGGAAGGCAGTTGAATTGCAAGTTAGCGATAACCGATGGGAAGCAAGGGAAGCGAGGTGGTACTGGGCCGATGGGACCTGATGGAATTCAAGGTCCAGGGAATGCTCATGGTGATGGAATGGGTTTGGCTCCACCGTCTTCCATGCCAGGGTCGCTGTCGGGTCAGTACGGTGGCCCTGTTGGCATGGCATCATATGGGGGTTTTGGGAGTGGGCTTCCTGGTCAGCCTCCGATGGGGAATCATCCTCTGAACTCATCTGTGGGTGGCACAGGGTTGTCTTCGGCCGGTAATCAGGCGCCATCTTCTCTAGGAGGTACTGGCGGGTATAGTTCTGGGCTAGGCGGTCCTTATGGTGGTTACGGTGGTCCTGGTTCGACTGGCTACGGTGCATTGGGGGGTGTTGGGGGTGCTGGTTTGGGTGGAGGTAGTGGTGGATTGGGTGCTGGTGGACTTGGTGGTTCGGCTGGTTCTTTGTATAGATTGCCAACTTCAGTAGGAATGCCAACCGGTGGCTACCAAGATAGTGGACCTTACGGTTTATCATCCGGGTACCCAAATCAGCATCACCAACCTACAGGAGCCTCACCTGTACCTAGGGTTCCACCTGGTGCTATGTATCCGAATGTGCCTCCTTACTACTAA 1323 0.5503 MDPTKKRKLDDNGVVPPDSDLNLTPSDARKIIERFSPEQLIDVLQEAVVRHADVLDAVRSIADPDVTQRKLFIRGLGWETTTDGLRSLFSTYGELEEAIVILDKATGKSKGYGFVTFKHVDGALLALKEPSKRIDGRVTVTQLAAAGNTGSNTNAADIAMRKIYVANVPSDLPADKLLAHFSLYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALVDPVKMVEGRQLNCKLAITDGKQGKRGGTGPMGPDGIQGPGNAHGDGMGLAPPSSMPGSLSGQYGGPVGMASYGGFGSGLPGQPPMGNHPLNSSVGGTGLSSAGNQAPSSLGGTGGYSSGLGGPYGGYGGPGSTGYGALGGVGGAGLGGGSGGLGAGGLGGSAGSLYRLPTSVGMPTGGYQDSGPYGLSSGYPNQHHQPTGASPVPRVPPGAMYPNVPPYY 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1307 440 MobiDBLite consensus disorder prediction 402 420 - -
Prci6g1307 440 MobiDBLite consensus disorder prediction 1 20 - -
Prci6g1307 440 PANTHER GEO13361P1-RELATED 52 349 - -
Prci6g1307 440 SMART rrm1_1 70 142 IPR000504 GO:0003723
Prci6g1307 440 SMART rrm1_1 162 234 IPR000504 GO:0003723
Prci6g1307 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 220 IPR000504 GO:0003723
Prci6g1307 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 138 IPR000504 GO:0003723
Prci6g1307 440 SUPERFAMILY RNA-binding domain, RBD 61 144 IPR035979 GO:0003676
Prci6g1307 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Prci6g1307 440 MobiDBLite consensus disorder prediction 397 428 - -
Prci6g1307 440 SUPERFAMILY RNA-binding domain, RBD 155 264 IPR035979 GO:0003676
Prci6g1307 440 Gene3D - 153 269 IPR012677 -
Prci6g1307 440 MobiDBLite consensus disorder prediction 239 265 - -
Prci6g1307 440 Gene3D - 51 152 IPR012677 -
Prci6g1307 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 238 IPR000504 GO:0003723
Prci6g1307 440 FunFam UBP1-associated protein 2C isoform A 52 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1307 Prci-Chr6 9562981 9566460 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1307 157 277 C2H2 Transcription Factor Family AT2G19380 35.537 4.24e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1307 K12741 - qsa:O6P43_001025 615.92