Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1301 ATGGTTAATTGTATGGTGCACAGTCTCGGTACGTGTTGCCCACCGAGGAGACTCTTGTTCTCACCATCTCTTTTCTCATTTACTTTACGGTACCGGTGTATCGTGTTCCCGGCGCCTGCAGTCTCTGGAACTTACAAGAAGGAGACCAAAGAGAAGGTCATTGTGATTTCTGGACCCACTGGCGCTGGTAAAAGTCGGCTTGCATTCGAACTTACGAAGCGACTCAATGGCGAAATTGTCAGTGCCGACTCGGTCCAGGAGGTAAAACATCATCTGATTGACATATTGCATCCATCTAAAGACTATTCAGCTGGAAATTTTTTTGAGGATGCAAGGCAAGCTACAAGATGTATCCTTGACAATGATCGTGTTCCCATAGTTGTTGGGGGAACTGGGCTGTACTTAAGATGGTTCATATATGGAAAACCAGATGTTCCCAAAGCCTCTCCTGATGTCAAATCTGAATTATATTCAGAGTTAGCTGAGCTGCAGAAAAATGAAGATTGGGATGCTGCTGTGCAGTTGGTGGTAAATGCAGGAGACCTGAAGGCCCAAACTTTAGCAGTGAATGATTGGTATCGATTACAGCGCAGCCTAGAGATTATCAAATCTAGTGGATCACCTCCATCAGCTTTTCGGGTGCCATATGATTCTTTCAGGGGACAGGGGGGTTATAGTGATACCAATGGTTTTGAATCTTCTGATGTCAACATTTCTGGTGATTCAATGGAAGATCCCATGTTCTCAGATTTGCCTTATGAGTTCATCTGCTTTTTCCTTTCTCGTCAGAGACTTGAACTATATAAAAGAATTGACCAGCGGTGTGAAGATATGCTATTAGGAAGGGATGGGATTCTTTCTGAGGCTCAATGGCTTCTAAAGTTGGGTCTTCATCCAAATTCCAATTCTGCAACACGAGCAATTGGTTATAGACAAGCTATGGAATACTTACTCAGATGCCAACAACATGGGGGACAGAGTTCAGCTGAAGAATTTTACAATTTTTTATCTGAATTTCAAAAAGAAACTAGGAATTTTGCAAAAAGACAATTGACGTGGTTTCGCAATGAGCAGATATACCACTGGCTTGATGCTTCCAAACCACTGAATGAAATTATTGAATTCATCAACAATGCTTATCGTGATTGGAGTGGAAATCGCATCGTGCCTGAATGCCTTGGAATGTCTAGAGATATACCTAATCGCCAAGAAGCTGCTCAACTCAAGTCATACCGCCCAAAAAATAGGCATTTCATTAAAGATGAAGATTGTTCACATATTCTGGAATGGATAAGGACTGAAGAATAA 1308 0.4197 MVNCMVHSLGTCCPPRRLLFSPSLFSFTLRYRCIVFPAPAVSGTYKKETKEKVIVISGPTGAGKSRLAFELTKRLNGEIVSADSVQEVKHHLIDILHPSKDYSAGNFFEDARQATRCILDNDRVPIVVGGTGLYLRWFIYGKPDVPKASPDVKSELYSELAELQKNEDWDAAVQLVVNAGDLKAQTLAVNDWYRLQRSLEIIKSSGSPPSAFRVPYDSFRGQGGYSDTNGFESSDVNISGDSMEDPMFSDLPYEFICFFLSRQRLELYKRIDQRCEDMLLGRDGILSEAQWLLKLGLHPNSNSATRAIGYRQAMEYLLRCQQHGGQSSAEEFYNFLSEFQKETRNFAKRQLTWFRNEQIYHWLDASKPLNEIIEFINNAYRDWSGNRIVPECLGMSRDIPNRQEAAQLKSYRPKNRHFIKDEDCSHILEWIRTEE 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1301 435 Hamap tRNA dimethylallyltransferase [miaA]. 53 374 IPR018022 GO:0008033
Prci6g1301 435 FunFam tRNA dimethylallyltransferase 9 143 214 - -
Prci6g1301 435 CDD NK 53 102 - -
Prci6g1301 435 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 372 IPR027417 -
Prci6g1301 435 Pfam IPP transferase 81 357 - -
Prci6g1301 435 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 170 IPR027417 -
Prci6g1301 435 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 50 370 IPR039657 -
Prci6g1301 435 Gene3D - 50 425 IPR027417 -
Prci6g1301 435 Gene3D - 144 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1301 Prci-Chr6 9511304 9518025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1301 56 212 C2H2 Transcription Factor Family AT2G27760 22.951 1.91e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1301 K00791 - gmx:100808814 600.512