Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1283 ATGGTCGTACTAGTGAGTATTGCACGAGTAGCAGCAACAAACCTTGAAGATGAAGATGAGGGTGGTGTTGCCGCAATAATAGGAGCTGTTATTGATAACAGTTCTCGAATAGGGAAAGAGAAGACTGTGGCTATAAAGATGGCATTGGAGGATTTCTATCATTCTCAGAATAACACTAACCAAAGCTTTGTTCTGCACCTGATGAACTCTCATGGAGATCCTCCTCAAGCTGCTCTGGCAGCTAGAGATCTGATTGATAAACAGAAAGTGCAAGCCATCATAGGACCACAAACATGGGAAGAGACATCCGTAGTGGCCAATGTTTGCAGTGAAAATAGCATACCAGTTCTGTCTCTTGCTGATGCAACGCCAAACTGGGCAACAGACAAGTGGCACTTCCTTGTTCAAGCCTCACAAAGTCAGTTCCTTCAAATGAAAGCTGTGTCTGCCATAGTTCAGTCCTGGGAATGGTACCAAGTTAACATTATATATGAAGACACAGAGTCTCTCTCCACAGGTATCTTAGCTCACCTCTCTCAAGCCCTCGCCGAAGCCGGCGTTGGAATAAGCAATCTTCTAGCCATCCCTCCTTTTGCTTCCTCCTCCTTGTCCCATGACCTCATGAAGCTCAAAGAAGGACAGTGTAGGGTCTTTGTGGTCCACTTGTCCTTCCCTTTGGCCCTTCATTTGTTTGAAACTGCAAAGAAACTGAACATGATGGAGAAAGACTATGTGTGGATCACTACTGATCCCTTCACAGGCCTTGTCCATTCCCTGAATGCTTCCACTCTCTCCTCAATGAAAGGAATCGTTGGAGTTAAGAGCTATTTTTCACAGCTAGGGCATCAATATGAGGACTTCTATGTCAAGTTTCGCCGGAGATATAGCTCAGAGAACCCTAATGAGTTTGACAATGAGCCAGGAATTTTTGCAGCTCAGGCTTATGACGCTGCATGGACTCTTGCCCTAGCAATGAATAAGACCAACAAGAAAGGAGGCCAAGTCCTGCTAGATAAGATTTTGCTCAGTAATTTTTCTGGTTTAAGTGGGAAAATTCAGTTCACTAATTATAGATTAGACCCTGCAAAAACATTTAAGATTATCAATGTGATGGGGCAAACTTATGGGGAACTAGGGTTCTGGTCAGATGGACAAGGCTTCTCAAGAACTATTGGTCCGGATGCTACATATAGTTCATCAATGAAGGTTCTGGGACCAGTGTTTTGGCCAGGAGGACCTTGGGATTCACCAAGAGGTTGGACCCTACCAACAATTGATAAACCTTTGAGAATTGGGGTTCCTCTTGAGTCAACATTAAAGCAATTTGTAAACATAATCCAAGATGAATGTGATAATACCACTTCATTTCAAGGCTTTGCTGTACAACTTTTCAAAGAAACTGCAGAACTTTTGCCATACCATCTTCCATACAAATTCTATACTTTCAATGGCACTTATGATGATTTGGTGAAGCAAATTTATTACAAGAATTTTGATGCAGTTGTTGGAGATGTAACAATTGTTTCATATCGGTATGAGTATGCAGAATTCACTCAGCCTTATACAGATCCAGGAGTGGTAATGATAGTGCCTGTCAGAGTAAAAGGAGGACAAAGAGGTTGGTTATTCTTGAAGCCTTTTACAAGGACCATGTGGGTTCTTATAGGCTTGATGATCATCTACAATGGATTTGTACTATGGATGCTCGAAAGAAACCATTTTCCAGACCTTAAGGGCTCTATGCTGAATCAAACTGGCACCATGTGTTGGTTGTCATTCATCACTTTCCTTTCCTTACATGGGGACAGGTTACATAGCAATTTGTCAAGGATGACAATGGTGGTGTGGTTGTTTGCGGGACTGATCATAACACAGACATACACAGCGAACCTGGCAAGCATGTTGACTGTAGAGAAGCTTGAGCCTACAACAGATGATGTTGATCAGCTAAGAAAGGGAAATGCCATTGTGGGGTGTGATAGAGGGTCCTTCTTGAAGAATTATCTTTATGAAGTTCTGCACTTTCAACCCACAAACATCAGGCAAATCAGTTCTGAAGAAGAATATGCTGAAGCTCTTAGGAATAAAGAAATTGCAGCAGCGTTTCTTGAGGTTCCTGTGGCCAAAATCTTCCTTGCAAAGTACTGTAAAGAGTTCATTCAGGCTGGTCCTATGTACAAGATTGGAGGGTTTGCTTTCGCATTTCCAAGGGAATCGCCACTGACTGCTACTGTAAACAAAGCCCTAATAAAAGCATTTGAGAACGGGAAGGTACTTGACCTGGAAAACAAAATGTTAGTATCAGAGCAATGTGAAAACACGAACACAGATGAAGATGACACTGCAAGTCTTGGTCCCAACAGCTTCTGGGCACTCTTCACCCTCACAGGAACCACCTCAACCATTGCCCTCTTGGTCTATGTTTTCCGTAAGAATCATTCCAATTTGCTCTGA 2454 0.4262 MVVLVSIARVAATNLEDEDEGGVAAIIGAVIDNSSRIGKEKTVAIKMALEDFYHSQNNTNQSFVLHLMNSHGDPPQAALAARDLIDKQKVQAIIGPQTWEETSVVANVCSENSIPVLSLADATPNWATDKWHFLVQASQSQFLQMKAVSAIVQSWEWYQVNIIYEDTESLSTGILAHLSQALAEAGVGISNLLAIPPFASSSLSHDLMKLKEGQCRVFVVHLSFPLALHLFETAKKLNMMEKDYVWITTDPFTGLVHSLNASTLSSMKGIVGVKSYFSQLGHQYEDFYVKFRRRYSSENPNEFDNEPGIFAAQAYDAAWTLALAMNKTNKKGGQVLLDKILLSNFSGLSGKIQFTNYRLDPAKTFKIINVMGQTYGELGFWSDGQGFSRTIGPDATYSSSMKVLGPVFWPGGPWDSPRGWTLPTIDKPLRIGVPLESTLKQFVNIIQDECDNTTSFQGFAVQLFKETAELLPYHLPYKFYTFNGTYDDLVKQIYYKNFDAVVGDVTIVSYRYEYAEFTQPYTDPGVVMIVPVRVKGGQRGWLFLKPFTRTMWVLIGLMIIYNGFVLWMLERNHFPDLKGSMLNQTGTMCWLSFITFLSLHGDRLHSNLSRMTMVVWLFAGLIITQTYTANLASMLTVEKLEPTTDDVDQLRKGNAIVGCDRGSFLKNYLYEVLHFQPTNIRQISSEEEYAEALRNKEIAAAFLEVPVAKIFLAKYCKEFIQAGPMYKIGGFAFAFPRESPLTATVNKALIKAFENGKVLDLENKMLVSEQCENTNTDEDDTASLGPNSFWALFTLTGTTSTIALLVYVFRKNHSNLL 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1283 817 FunFam Glutamate receptor 424 539 - -
Prci6g1283 817 Gene3D - 424 538 - -
Prci6g1283 817 Gene3D - 35 363 - -
Prci6g1283 817 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 27 809 IPR015683 -
Prci6g1283 817 SMART GluR_14 428 768 IPR001320 GO:0015276|GO:0016020
Prci6g1283 817 CDD GluR_Plant 427 766 - -
Prci6g1283 817 FunFam Glutamate receptor 144 305 - -
Prci6g1283 817 Pfam Bacterial extracellular solute-binding proteins, family 3 452 764 IPR001638 -
Prci6g1283 817 FunFam Glutamate receptor 540 678 - -
Prci6g1283 817 Gene3D - 140 383 - -
Prci6g1283 817 Pfam Ligand-gated ion channel 765 797 IPR001320 GO:0015276|GO:0016020
Prci6g1283 817 CDD PBP1_GABAb_receptor_plant 27 391 IPR044440 -
Prci6g1283 817 SUPERFAMILY Periplasmic binding protein-like II 403 764 - -
Prci6g1283 817 PIRSF IGluLR_plant 1 816 IPR017103 -
Prci6g1283 817 Gene3D - 539 677 - -
Prci6g1283 817 SUPERFAMILY Periplasmic binding protein-like I 27 420 IPR028082 -
Prci6g1283 817 Pfam Receptor family ligand binding region 44 371 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1283 Prci-Chr6 9324133 9328884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1283 27 809 Ion Channels AT2G29110 34.686 2.61e-150 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1283 - - qsa:O6P43_029155 1042.72