Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1258 ATGAGTGATTTCTCAGCCTCTCGCTTTCTCTCAGAACAAGCCTTGAAAGATCGTAGAGTTTCTTTTTTACTCCTCTATCTCCAGCCACCAGCCCCTGTAATTGCGTCCTCTTCAATGGAGAGCTATTACCCTTCTGACAACAATGATTCTCATTTGCCTCCTGGCTTTCGTTTCCACCCTACAGATGAAGAACTCATCACGTACTACCTCCTCAAGAAGGTCCTTGATAATAGCTTCACTGGTAGAGCTATCGCTGAAGTTGACCTTAACAAATGCGAGCCATGGGAGCTTCCAGAGAAAGCGAAGATGGGAGAGAAAGAGTGGTACTTCTTCAGCCTGAGAGATAGGAAGTATCCAACTGGGCTAAGAACTAATAGGGCTACAGAGGCGGGATACTGGAAGGCCACCGGGAAAGACAGAGAAATCTATGGCTCAAAAACTTGCTGTCTGGTGGGGATGAAGAAGACGCTTGTGTTCTACAGAGGTAGGGCTCCTAAAGGCGAGAAGAGCAATTGGGTTATGCACGAGTATCGCCTTGAAGGCAAATTTGCCTACCATTGTCTCTCTCGCTCCTCTAAGGACGAGTGGGTCATTTCCCGAGTGTTCCAGAAGAGTGGCTCCGGCAACGGCGGCTCCGCCACCATATCCTCCTCTTGCAGTGGCTCAAAGAAGACCAGAAACATCATGAACTCTTCTCCTAACTTGAGTCTCTACCCGGCTGAGCCCAGTTCTCCCTCCTCCGTCTACCTTCCTCCTCTGCTTGATTCTTCTCCCTACTCGGCGGCCGCCGTCAACGATCGTGACAGTTGCTCTAATACCTACGACAGCTTGAATGCCTCAAGAGAGCACGTGTCCTGTTTCTCCACAATCTCTGCCACCGCCAGCAACAACTACAACTTCGACTTGCCTGCTGCGCCGCCGTCTGTTACGGTGGATCCCGTTGCCCGTTTTTTTAGAAACGGAGGCGTTTCTTCCTTCCCGACCCTGAGGTCGCTGCAACTACAAGATAACCTTCAGCTTCCCTTCTTTATCCCGCCGCTGCCGCAGCAGCCCTTCCAAGGCGTTCCCGTTGACATGAACTGGGCTACACCGGTTGACGAGCAAAGAGTAGCGGATGGTGGCTCCGGCATGACCGGTTTGGGCGGCTCCGAGCTCGATTGCGTGTGGGGATTCTAA 1176 0.5179 MSDFSASRFLSEQALKDRRVSFLLLYLQPPAPVIASSSMESYYPSDNNDSHLPPGFRFHPTDEELITYYLLKKVLDNSFTGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYGSKTCCLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHCLSRSSKDEWVISRVFQKSGSGNGGSATISSSCSGSKKTRNIMNSSPNLSLYPAEPSSPSSVYLPPLLDSSPYSAAAVNDRDSCSNTYDSLNASREHVSCFSTISATASNNYNFDLPAAPPSVTVDPVARFFRNGGVSSFPTLRSLQLQDNLQLPFFIPPLPQQPFQGVPVDMNWATPVDEQRVADGGSGMTGLGGSELDCVWGF 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1258 391 ProSiteProfiles NAC domain profile. 52 204 IPR003441 GO:0003677|GO:0006355
Prci6g1258 391 SUPERFAMILY NAC domain 49 204 IPR036093 GO:0003677|GO:0006355
Prci6g1258 391 Gene3D NAC domain 61 207 IPR036093 GO:0003677|GO:0006355
Prci6g1258 391 Pfam No apical meristem (NAM) protein 53 179 IPR003441 GO:0003677|GO:0006355
Prci6g1258 391 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 51 266 - -
Prci6g1258 391 MobiDBLite consensus disorder prediction 205 224 - -
Prci6g1258 391 FunFam NAC domain-containing protein 100-like 61 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1258 Prci-Chr6 9164449 9169936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1258 42 391 NAC Transcription Factor Family AT5G53950 51.862 7.79e-112 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci6g1258 NAM 7.6e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1258 - - pcin:129313031 764.222