Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1236 ATGGAAGCCAAGCTTGAGAGGAAGAGAACTTCAATTGAGAAGGTAAGGAAGGATAACAACGTAGTTGAAGAAGAAGAAGTAGAGGATGAGGTAGAAGAGGAAGAGGAAAGTGGCGGTGGAGGTGATGGTGGTGTCGCAGAAGAGCAGAAGAGGAAAGGTGTCATGGGAAGTGGAAGAAGAGGGTCAAGTGGAAGTGGTGGAGTTTCTCCACCTTGTTGTCAGGCAGAGAGGTGTGGAGCTGATCTGAGTGATGCAAAGCGTTACCATCGCCGCCACAGGGTGTGCGAGTTCCACTCCAAGGCAGCAGCTGTAATGGTTGCAGGGCTAAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACTTGGGGGAATTTGATGAAGCTAAGAGAAGCTGCCGGAGGCGCTTGGCTGGGCACAACGAACGTCGCCGCAAAAGCACTGGTGAAATTTACAATGAGAGCTGCAGCCGTGGCAAAGGTCACCACACAAAGGAGAGCCATTGCAGGCATGCTGATGATAGAGGACGAGTCCAAGTGAGCACTCCTGGGAGTTCTGGCTACAAATCTTTTCACATAAAATAA 585 0.506 MEAKLERKRTSIEKVRKDNNVVEEEEVEDEVEEEEESGGGGDGGVAEEQKRKGVMGSGRRGSSGSGGVSPPCCQAERCGADLSDAKRYHRRHRVCEFHSKAAAVMVAGLRQRFCQQCSRFHDLGEFDEAKRSCRRRLAGHNERRRKSTGEIYNESCSRGKGHHTKESHCRHADDRGRVQVSTPGSSGYKSFHIK 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1236 194 ProSiteProfiles Zinc finger SBP-type profile. 70 147 IPR004333 GO:0003677
Prci6g1236 194 MobiDBLite consensus disorder prediction 143 177 - -
Prci6g1236 194 Coils Coil 5 25 - -
Prci6g1236 194 MobiDBLite consensus disorder prediction 1 22 - -
Prci6g1236 194 Pfam SBP domain 73 146 IPR004333 GO:0003677
Prci6g1236 194 SUPERFAMILY SBT domain 70 151 IPR036893 GO:0003677|GO:0005634
Prci6g1236 194 MobiDBLite consensus disorder prediction 1 71 - -
Prci6g1236 194 FunFam Squamosa promoter-binding-like protein 14 64 134 - -
Prci6g1236 194 MobiDBLite consensus disorder prediction 138 194 - -
Prci6g1236 194 Gene3D - 63 134 IPR036893 GO:0003677|GO:0005634
Prci6g1236 194 MobiDBLite consensus disorder prediction 23 41 - -
Prci6g1236 194 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 45 158 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1236 Prci-Chr6 9048270 9049829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1236 58 150 SBP-box Gene Family AT1G53160 72.043 4.69e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Prci6g1236 SBP 3.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1236 - - aprc:113864686 243.817