Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1235 ATGGTGGTGCTGAGATATTTCTTGATGAGTTTCCTCCAATGGGGGTTCTTGGCCTGCTTTCTTTGCTTATCTCTGGGTGTGAAAACCCCAACCCCGTCTTGTGACTCTCGTGATCTGTTGGCGCTGAGGCAATTTGCTGGCAACCTCACAAATGGGTCTATTATCACATCATGGTCCACTGATATCGATTGCTGCAAATGGGTTGGTGTTGTCTGCGATAATATGACTGATGAGACAACTTCTAGCAGAGTGATACAGTTGATTCTGCCTCAAATGGGTCTCAATGGGGCAATTTCTAGTTCTCTAGCGCAATTAGACCGCTTAATTGTGCTGGATCTTTCGTTCAATCATCTCCAAGGTGCGTTGCCCGCAGAATTCTCCAACTTGAAGCTGTTGAAGTTTCTTGATTTGAGCCATAATATGCTGTCAGGATCTGTTGCTGAAGTTCTTTCTGGTTTGCAATCCATTCAGACACTGAACATATCCAGCAATTCAATTGTCGGAAATCTGTCTCAGGTTGGGGAATTTCGTCATCTCGTTGCATTCAACATAAGCAACAATTCATTCAACGGTCAGTTCAATTCTCAAATTTGCAGTTCCTCTAAGGGGCTTCGTGTGCTTGATTTATCTGCAAATCGCTTTGCTGGTGGTCTTGAAGGCTTGGACAAATGTAACACATCTCTCCAGGAGTTGCGTTTGGATAACAATTTATTTTCAGGCCCTCTTCCAGATGCCTTGTACTCACTGTCAGCTTTGGAGCAACTCTCAGTGTCTGTGAACAATTTCTCTGGTCAGTTAAGCACGCAGCTAAGTAAGCTCTCTAGCTTAAAGTCTATCATAATTTCTGGGAACCAGTTTTCTGGGGTGCTCCCAAATGTGTTTGGGAATCTGACAGATTTAGAACAGTTAGCAGCACACACCAATTCATTTTCTGGGTCATTGCCATCTAGCCTGGCTTTATGCTCAAAGCTTCGGTTGCTTGATCTTCGAAACAATTCTCTGGCAGGTCAAATTGATCTTAATTTCACAGGATTAACTAATCTGTGTAACCTTGATCTTGCATCTAATCATTTTACTGGCTCTCTTCCAAGCTCCTTGTCCTATTGCCGCGAATTGAAAGTTTTAAGCCTTGCTAAGAATGGGTTGACTGGCTCAATTCCTGAAAACTATGCAAACCTTTCATCACTTTTTTTCCTGTCCTTGTCCAACAATAGCTTAGAGAACTTGCCTGGGGCCCTGTCGGTGCTGCAGCATTGCAAAAACCTCACTACACTTATCCTTTCTAAGAATTTCCGTGGTGAGGAAATACCAAAAAGTGTTATAGGCTTTGAGAGCCTAATGGTTTTAGCTCTGGGAAATTGTGGTCTCAAAGGCCAGGTCCCTGCTTGGCTATTGAATTGCAGCAAATTAGCAGTCCTTGATTTGTCTTGGAACCGTTTGGAAGGTAGTATCCCTTCTTGGATTGGTAGGATGGACAATTTGTTCTACCTGGATTTCTCGAATAATTCTTTCGTGGGAGAAATGCCAAAAAGTTTGACACAGTTGAAAGGTCTTGTATCCACGAATTGCACTAGACCAAATCTGTCTCCATCTGCTGGCGTTCCTCTCTATGTTAAGAGAAACAAGAGTGCTCATGGGCTGCAATATAACCAAGCTTCAAGTTTCCCTCCTTCAATATTATTGAGCAATAACAGATTGAGTGGAATGATATGGCCGGAAATCGGGCAACTCAAAGCGCTGCATGTCTTGGATTTAAGCAGGAATGAAATCTCTGGTACTATTCCTACCAGTATTTCAGAGATGGAGAACTTGGAAACATTAGATCTGTCATATAATGATCTCGATGGAGTGATCCCTCCATCATTTAACAACCTCACATTCTTGTCAAAGTTCAGTGTGGCATATAATCACTTGCGGGGACCAATTCCAACAGGGGGACAGTTTCTAAGCTTTTCTAGTTCAAGTTTTGAGGGCAACCCGGGACTTTGTGGTGGAATAGTTTCTCCATGCAAAACCGACAATATGGGATGGAGGCCCAATATGCCTTCTGGTTCTTCCAGCAAATTTGGTAGAAACAATGTTCTTGGTATAACAATCAGTATAGGTGTAGGGCTAGCCCTGCTTCTTGCCATTGTTCTGCTGAAAGTATCAAAAAGGGATGAAGAGAAGCCAGTTGAAAACTTTGATGAGGAATTGGGTGGGCCCCCCAGGTTATCTGAAGGACTTGTTTCTTCAAAACTGGTTCTTTTTCAGAATTCAGATTGCAAGGATCTCACAGTTTCAGATTTGTTGAAATCCACAAACAATTTTAACCAGGCAAACATTATTGGTTGTGGTGGGTTTGGTCTTGTGTACAAGGCAAATCTTCCAAATGGCACGAAAGCTGCAGTCAAGAGACTTTCTGGGGACTGTGGTCAGATGGAGCGTGAATTCCAAGCTGAAGTAGAGGCCCTTTCCAGAGCTCAGCACAAGAACCTTGTTTCTCTGAAAGGTTATTGCCGGCATGGCAATGTCAGATTGTTAATCTATTCCTACTTGGAGAATGGAAGTTTAGATTACTGGCTTCATGAGTGTGTGGATGCTAATTCAGCTCTGAAATGGGATGTGAGACTCAAGATTGCAAAAGGTGCAGCCCATGGATTAGCTTATTTGCACAAGGGATGTGAGCCGTTCATTGTCCATCGAGATGTTAAGTCTAGCAATATACTTCTGGATGATAGATTTGAAGCTCATTTGGCTGATTTTGGTCTTTCAAGGCTACTTCAGCCTTATGACACCCATGTTACAACGGATTTAGTGGGTACATTAGGATATATTCCGCCAGAGTATAGTCAGACATTAACAGCAACCTTCAGGGGTGATGTCTATAGCTTCGGTGTTGTTCTTCTTGAGCTTCTTACCGGTAGAAGGCCAGTAGAAGTCATCAAGGGTAAAAACTGCAGGAACCTGGTATCTTGGGTGTTTCAAATGAAATCTGAAAACAAGGAGCAAGAAATTTTCGACCCAGCCATTTTGGACAAGGATCATGAGAAGCAGCTCTTGGAGGTACTGGCCATTGCTTGTAGATGTTTGGACCAGGAACCAAGACAAAGACCCTGTATCGAAGAAGTTGTTTCGACGCTTGATCGTGTTGGGGTGGATGGTTTACAGCAATGA 3156 0.4303 MVVLRYFLMSFLQWGFLACFLCLSLGVKTPTPSCDSRDLLALRQFAGNLTNGSIITSWSTDIDCCKWVGVVCDNMTDETTSSRVIQLILPQMGLNGAISSSLAQLDRLIVLDLSFNHLQGALPAEFSNLKLLKFLDLSHNMLSGSVAEVLSGLQSIQTLNISSNSIVGNLSQVGEFRHLVAFNISNNSFNGQFNSQICSSSKGLRVLDLSANRFAGGLEGLDKCNTSLQELRLDNNLFSGPLPDALYSLSALEQLSVSVNNFSGQLSTQLSKLSSLKSIIISGNQFSGVLPNVFGNLTDLEQLAAHTNSFSGSLPSSLALCSKLRLLDLRNNSLAGQIDLNFTGLTNLCNLDLASNHFTGSLPSSLSYCRELKVLSLAKNGLTGSIPENYANLSSLFFLSLSNNSLENLPGALSVLQHCKNLTTLILSKNFRGEEIPKSVIGFESLMVLALGNCGLKGQVPAWLLNCSKLAVLDLSWNRLEGSIPSWIGRMDNLFYLDFSNNSFVGEMPKSLTQLKGLVSTNCTRPNLSPSAGVPLYVKRNKSAHGLQYNQASSFPPSILLSNNRLSGMIWPEIGQLKALHVLDLSRNEISGTIPTSISEMENLETLDLSYNDLDGVIPPSFNNLTFLSKFSVAYNHLRGPIPTGGQFLSFSSSSFEGNPGLCGGIVSPCKTDNMGWRPNMPSGSSSKFGRNNVLGITISIGVGLALLLAIVLLKVSKRDEEKPVENFDEELGGPPRLSEGLVSSKLVLFQNSDCKDLTVSDLLKSTNNFNQANIIGCGGFGLVYKANLPNGTKAAVKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCRHGNVRLLIYSYLENGSLDYWLHECVDANSALKWDVRLKIAKGAAHGLAYLHKGCEPFIVHRDVKSSNILLDDRFEAHLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVSWVFQMKSENKEQEIFDPAILDKDHEKQLLEVLAIACRCLDQEPRQRPCIEEVVSTLDRVGVDGLQQ 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1235 1051 ProSiteProfiles Leucine-rich repeat profile. 395 417 IPR001611 GO:0005515
Prci6g1235 1051 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 243 338 - -
Prci6g1235 1051 ProSitePatterns Protein kinases ATP-binding region signature. 776 798 IPR017441 GO:0005524
Prci6g1235 1051 FunFam Leucine-rich repeat receptor-like kinase 38 155 - -
Prci6g1235 1051 Gene3D Phosphorylase Kinase; domain 1 739 845 - -
Prci6g1235 1051 ProSitePatterns Serine/Threonine protein kinases active-site signature. 892 904 IPR008271 GO:0004672|GO:0006468
Prci6g1235 1051 Pfam Leucine rich repeat N-terminal domain 37 73 IPR013210 -
Prci6g1235 1051 CDD STKc_IRAK 776 1043 - -
Prci6g1235 1051 ProSiteProfiles Protein kinase domain profile. 770 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1235 1051 FunFam Tyrosine-sulfated glycopeptide receptor 1 342 675 - -
Prci6g1235 1051 Gene3D Transferase(Phosphotransferase) domain 1 846 1046 - -
Prci6g1235 1051 Gene3D Ribonuclease Inhibitor 172 266 IPR032675 -
Prci6g1235 1051 Gene3D Ribonuclease Inhibitor 267 364 IPR032675 -
Prci6g1235 1051 SMART serkin_6 770 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1235 1051 Pfam Leucine rich repeat 108 166 IPR001611 GO:0005515
Prci6g1235 1051 Pfam Leucine rich repeat 559 614 IPR001611 GO:0005515
Prci6g1235 1051 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 81 240 - -
Prci6g1235 1051 SUPERFAMILY L domain-like 58 277 - -
Prci6g1235 1051 Pfam Protein kinase domain 771 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1235 1051 FunFam Phytosulfokine receptor 1 734 845 - -
Prci6g1235 1051 FunFam Leucine-rich repeat receptor-like protein kinase 846 1050 - -
Prci6g1235 1051 SMART LRR_sd22_2 321 353 - -
Prci6g1235 1051 SMART LRR_sd22_2 201 223 - -
Prci6g1235 1051 SMART LRR_sd22_2 577 606 - -
Prci6g1235 1051 SMART LRR_sd22_2 393 411 - -
Prci6g1235 1051 SMART LRR_sd22_2 129 155 - -
Prci6g1235 1051 SUPERFAMILY L domain-like 202 529 - -
Prci6g1235 1051 SUPERFAMILY Protein kinase-like (PK-like) 750 1041 IPR011009 -
Prci6g1235 1051 SMART LRR_typ_2 129 152 IPR003591 -
Prci6g1235 1051 SMART LRR_typ_2 467 491 IPR003591 -
Prci6g1235 1051 SMART LRR_typ_2 105 128 IPR003591 -
Prci6g1235 1051 SMART LRR_typ_2 273 296 IPR003591 -
Prci6g1235 1051 SMART LRR_typ_2 601 624 IPR003591 -
Prci6g1235 1051 SMART LRR_typ_2 577 600 IPR003591 -
Prci6g1235 1051 SMART LRR_typ_2 393 416 IPR003591 -
Prci6g1235 1051 SMART LRR_typ_2 345 369 IPR003591 -
Prci6g1235 1051 SUPERFAMILY L domain-like 547 665 - -
Prci6g1235 1051 PRINTS Leucine-rich repeat signature 132 145 - -
Prci6g1235 1051 PRINTS Leucine-rich repeat signature 601 614 - -
Prci6g1235 1051 Gene3D Ribonuclease Inhibitor 370 674 IPR032675 -
Prci6g1235 1051 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Prci6g1235 1051 Gene3D Ribonuclease Inhibitor 35 171 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1235 Prci-Chr6 9033658 9038387 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1235 297 645 Receptor kinase-like Gene Family AT1G55610 30.095 3.48e-25 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Prci6g1235 Pkinase 8.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1235 - - gmx:100797812 1555.81