Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1222 ATGGAGGGTTCTTCTGGGTCTGTTTGGCAGAAATCTAACGCCTTTCAGGTATTAAATACTTCTGGAGTTTCAGACAGGAACACAAGGCCTATTTGTCCAGACAGAAGCCCTTATTCTGGTGAGACATCAAATAATTCTTCGGGCTTCAAGAAGGACAAGGATAGAATTGTGTTGGCTCTTAAAAATCAGGCTAGTTTCTCCGGGGTTCAAGAGAGTGAGGTAGCGGTTGGCCCTTATATTCATTCTGCAAAATGGGCTGATATTAGCTTGAGGCAGTGGTTAGATAAACCTGAACGCTCGGTGGATGTATTTGAATGCTTGCACATATTTAGGCAAATAGTAGAAATTGTTAATACAGCACATTGTCAAGGAATTGTTGTTCATAATGTGAGACCTTCCTGCTTTGTAATGTCACCTTTCAATAACATCTCCTTCATTGAGTCTGCATCTTGTTCAGATTCTGGTTCAGTTTCTTTAGAAAATGGATTAAACAGCCTTGGTGCTCAGATTAAAACCCCTGCATTTCTCAGTTCCCTTGAAATCCATCCCCAGAGAATATTGAGAAGTGAAGTAATGGAATGTGTCAGGACTTCAACAACTGTCATGTCGAATTCTAGTTACATGCTGTCCAATGCAGCATATGCAGCTCGTGCATCTTTAATAGAAGATACTGAAGAAAATAAAGTCAGAAACAGGATCAAAACTGAAGAAATAGAAGGAAAGAAGCAGACATTTCCGCTGAAACAGGCATTGCTAATGGAGACAAGTTGGTATACTAGTCCTGAAGAGGTAGCTGGTTCTTCAAGTTCATGTGCTTCGGACATTTACCGGTTGGGGGTTCTCCTGTTTGAGCTATTCTGCCCATTCAGCTCCAAAGAAGAAAAGAGCAGAACAATGTCTAGCCTTATACATAGAGTTCTTCCTCCGCAATTACTTTTGGAGTGGCCCAAAGAAGCTACATTCTGCTTATGGCTACTTCACCCTGAACCTAGTAGTCGTCCAACACTCGGAGAGTTGTTGCAGAGTGGGTTCCTTATCGAACAGAGAGATATTGAAGAAGCAGCCAAGCAGCAGCCAATATTTAAAGAAGTTGTTGGCTCTGATTTAGGGAGTGATGATCATTTAGCATCAAGTTTTCCATCCATGAAAGTTGTCGAGAGTGGAGATTCTGCTGACCAAGGGAACATAAAGCACAACGTTCAAGAATGCAATAGTAGCATTGGTGATGACCAAAACAATTGTGGCAATGTTCTTTCAAATAATTCTCGGCTAATGAAAAACTTTAAGAGGCTAGAGTCGGAATACTTTTTAATGCGATGCAAATCATCAAAGAAACCGAAGGTTACTGATGGTAGAGGCTCTTTTTTTATGACTGAAAGAGGTTTTGTCAACAACTTGGCATCAAAAGACCAATGCAGAGAGGATAGAATTGCTTGGAAAAATCCTTTCCTTGATGGTTTGTGCAAATACCTATCTTTCAGTAAGCTAAAGGTTAAAGCTGACCTGAAGCAAGGGGATCTGTTGCAGTCTTCAAACCTAGTATGTGCACTCAGTTTTAGTCGTGAAGAGACATTTTTCGCTACTGCTGGTGTAAGTAAAAAAATTAAAGTTTTTGATTATGACTCGATCATAAATGAGGATCATGATATCAGCTATCCAGTAGTGGAGATGGCTAGCAGGTCAAAGTTGAGCAGTGTATGTTGGAACACTTACATCAAAAGCCAAATAGCTTCTAGTAACTTTGAAGGTGTTGTACAGTTATGGGATGTGACAAGAAGTAGACCACTGTCTGAAATGGATGAGCATGAGAGGCGGGTATGGTCCATCGATTTCTCATCAGCAGACCCAACAATGTTGGCAAGTGGGAGTGATGATGGTTCTGTTAAGCTATGGAGTATCAATCAGGGAATTAATGTCGGTACCATCAAAACAATGGCTAATGTCTGCAGTGTTCAGTTTTCCCCAGATTCTGGTCGTTTCCTTGCATTTGGTTCAGCAGATCATCGAATATATTATTATGATCTCAGGAACCTAAAAATGCCTCTTTATACATTCCTTGGACATGATAAGACTGTGAGTTACATCAAGTTTGTGGACAGTGTGAACCTTGTCTCTGCATCCACAGATAACACTTTGAAGCTTTGGGATTTTTCTGCATGCACATCTCAAGCTATAGACACGCCACTTCAAACATTCACAGGTCACATGAATGTGAAGAACTTTGTGGGATTGTCAGTATCTGATGGATTCATTGCCACTGGTTCGGAGACAAATGAGGTGTTTATATACAACAAGGTTTTTCCCATGCCAGCCTTGTCTTTCAAGTTTCAGAACACAGACCCATTTTCTGGGCAAGAAGTGGATGATTCTGCACAGTTCATCTCTTCTGTTTGTTGGCGCAGTCAGTCAAACACCTTAGTTGCTGCTAATTCCACAGGGAATATCAAAATTCTGGAGATGGTTTAA 2466 0.4079 MEGSSGSVWQKSNAFQVLNTSGVSDRNTRPICPDRSPYSGETSNNSSGFKKDKDRIVLALKNQASFSGVQESEVAVGPYIHSAKWADISLRQWLDKPERSVDVFECLHIFRQIVEIVNTAHCQGIVVHNVRPSCFVMSPFNNISFIESASCSDSGSVSLENGLNSLGAQIKTPAFLSSLEIHPQRILRSEVMECVRTSTTVMSNSSYMLSNAAYAARASLIEDTEENKVRNRIKTEEIEGKKQTFPLKQALLMETSWYTSPEEVAGSSSSCASDIYRLGVLLFELFCPFSSKEEKSRTMSSLIHRVLPPQLLLEWPKEATFCLWLLHPEPSSRPTLGELLQSGFLIEQRDIEEAAKQQPIFKEVVGSDLGSDDHLASSFPSMKVVESGDSADQGNIKHNVQECNSSIGDDQNNCGNVLSNNSRLMKNFKRLESEYFLMRCKSSKKPKVTDGRGSFFMTERGFVNNLASKDQCREDRIAWKNPFLDGLCKYLSFSKLKVKADLKQGDLLQSSNLVCALSFSREETFFATAGVSKKIKVFDYDSIINEDHDISYPVVEMASRSKLSSVCWNTYIKSQIASSNFEGVVQLWDVTRSRPLSEMDEHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQGINVGTIKTMANVCSVQFSPDSGRFLAFGSADHRIYYYDLRNLKMPLYTFLGHDKTVSYIKFVDSVNLVSASTDNTLKLWDFSACTSQAIDTPLQTFTGHMNVKNFVGLSVSDGFIATGSETNEVFIYNKVFPMPALSFKFQNTDPFSGQEVDDSAQFISSVCWRSQSNTLVAANSTGNIKILEMV 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1222 821 ProSitePatterns Trp-Asp (WD) repeats signature. 703 717 IPR019775 -
Prci6g1222 821 PRINTS G protein beta WD-40 repeat signature 619 633 IPR020472 -
Prci6g1222 821 PRINTS G protein beta WD-40 repeat signature 703 717 IPR020472 -
Prci6g1222 821 PRINTS G protein beta WD-40 repeat signature 576 590 IPR020472 -
Prci6g1222 821 ProSiteProfiles Protein kinase domain profile. 1 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1222 821 SMART WD40_4 635 674 IPR001680 GO:0005515
Prci6g1222 821 SMART WD40_4 550 589 IPR001680 GO:0005515
Prci6g1222 821 SMART WD40_4 780 819 IPR001680 GO:0005515
Prci6g1222 821 SMART WD40_4 678 716 IPR001680 GO:0005515
Prci6g1222 821 SMART WD40_4 592 632 IPR001680 GO:0005515
Prci6g1222 821 SMART WD40_4 725 764 IPR001680 GO:0005515
Prci6g1222 821 SMART WD40_4 504 539 IPR001680 GO:0005515
Prci6g1222 821 ProSiteProfiles Trp-Asp (WD) repeats profile. 599 641 IPR001680 GO:0005515
Prci6g1222 821 Gene3D Transferase(Phosphotransferase) domain 1 86 356 - -
Prci6g1222 821 PANTHER PROTEIN SPA1-RELATED 2 349 821 IPR044630 GO:0009640
Prci6g1222 821 ProSiteProfiles Trp-Asp (WD) repeats profile. 685 718 IPR001680 GO:0005515
Prci6g1222 821 SUPERFAMILY WD40 repeat-like 509 818 IPR036322 GO:0005515
Prci6g1222 821 Gene3D - 485 821 IPR015943 GO:0005515
Prci6g1222 821 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 685 718 - -
Prci6g1222 821 Pfam WD domain, G-beta repeat 681 716 IPR001680 GO:0005515
Prci6g1222 821 Pfam WD domain, G-beta repeat 595 632 IPR001680 GO:0005515
Prci6g1222 821 SUPERFAMILY Protein kinase-like (PK-like) 87 341 IPR011009 -
Prci6g1222 821 SMART serkin_6 2 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1222 821 MobiDBLite consensus disorder prediction 20 49 - -
Prci6g1222 821 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 599 636 - -
Prci6g1222 821 CDD WD40 514 817 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1222 Prci-Chr6 8884103 8889497 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1222 585 764 Miscellaneous Gene Families AT5G08390 27.473 6.30e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Prci6g1222 WD40 0.00012 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1222 K26557 - pcin:129313660 1614.36