Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1221 ATGGAGGGTTCTTCTGGGTCTGTTTGGCAGAAATCTAACGCCTTTCAGGTATTAAATACTTCTGGAGTTTCAGACAGGAACACAAGGCCTATTTGTCCAGACAGAAGCCCTTATTCTGGTGAGACATCAAATAATTCTTCGGGCTTCAAGAAGGACAAGGATAGAATTGTGTTGGCTCTTAAAAATCAGGCTAGTTTCTCCGGGGTTCAAGAGAGTGAGGTAGCGGTTGGCCCTTATATTCATTCTGCAAAATGGGCTGATATTAGCTTGAGGCAGTGGTTAGATAAACCTGAACGCTCGGTGGATGTATTTGAATGCTTGCACATATTTAGGCAAATAGTAGAAATTGTTAATACAGCACATTGTCAAGGAATTGTTGTTCATAATGTGAGACCTTCCTGCTTTGTAATGTCACCTTTCAATAACATCTCCTTCATTGAGTCTGCATCTTGTTCAGATTCTGGTTCAGTTTCTTTAGAAAATGGATTAAACAGCCTTGGTGCTCAGATTAAAACCCCTGCATTTCTCAGTTCCCTTGAAATCCATCCCCAGAGAATATTGAGAAGTGAAGTAATGGAATGTGTCAGGACTTCAACAACTGTCATGTCGAATTCTAGTTACATGCTGTCCAATGCAGCATATGCAGCTCGTGCATCTTTAATAGAAGATACTGAAGAAAATAAAGTCAGAAACAGGATCAAAACTGAAGAAATAGAAGGAAAGAAGCAGACATTTCCGCTGAAACAGGCATTGCTAATGGAGACAAGTTGGTATACTAGTCCTGAAGAGGTAGCTGGTTCTTCAAGTTCATGTGCTTCGGACATTTACCGGTTGGGGGTTCTCCTGTTTGAGCTATTCTGCCCATTCAGCTCCAAAGAAGAAAAGAGCAGAACAATGTCTAGCCTTATACATAGAGTTCTTCCTCCGCAATTACTTTTGGAGTGGCCCAAAGAAGCTACATTCTGCTTATGGCTACTTCACCCTGAACCTAGTAGTCGTCCAACACTCGGAGAGTTGTTGCAGAGTGGGTTCCTTATCGAACAGAGAGGTGATATGGAAGAACGTGAAGCAGCAATAGAACTTAGAGAAAAAATAGAGGAACAAGAGTTGTTACTAGAATTCCTTTTGTTAATTCAGCAGAGAAAAAAGGGTGTGGCTGATAATTTGCAGCAAACTGTTTCTTTTCTGTGTTCAGATATTGAAGAAGCAGCCAAGCAGCAGCCAATATTTAAAGAAGTTGTTGGCTCTGATTTAGGGAGTGATGATCATTTAGCATCAAGTTTTCCATCCATGAAAGTTGTCGAGAGTGGAGATTCTGCTGACCAAGGGAACATAAAGCACAACGTTCAAGAATGCAATAGTAGCATTGGTGATGACCAAAACAATTGTGGCAATGTTCTTTCAAATAATTCTCGGCTAATGAAAAACTTTAAGAGGCTAGAGTCGGAATACTTTTTAATGCGATGCAAATCATCAAAGAAACCGAAGGTTACTGATGGTAGAGGCTCTTTTTTTATGACTGAAAGAGGTTTTGTCAACAACTTGGCATCAAAAGACCAATGCAGAGAGGATAGAATTGCTTGGAAAAATCCTTTCCTTGATGGTTTGTGCAAATACCTATCTTTCAGTAAGCTAAAGGTTAAAGCTGACCTGAAGCAAGGGGATCTGTTGCAGTCTTCAAACCTAGTATGTGCACTCAGTTTTAGTCGTGAAGAGACATTTTTCGCTACTGCTGGTGTAAGTAAAAAAATTAAAGTTTTTGATTATGACTCGATCATAAATGAGGATCATGATATCAGCTATCCAGTAGTGGAGATGGCTAGCAGGTCAAAGTTGAGCAGTGTATGTTGGAACACTTACATCAAAAGCCAAATAGCTTCTAGTAACTTTGAAGGTGTTGTACAGTTATGGGATGTGACAAGAAGTAGACCACTGTCTGAAATGGATGAGCATGAGAGGCGGGTATGGTCCATCGATTTCTCATCAGCAGACCCAACAATGTTGGCAAGTGGGAGTGATGATGGTTCTGTTAAGCTATGGAGTATCAATCAGGGAATTAATGTCGGTACCATCAAAACAATGGCTAATGTCTGCAGTGTTCAGTTTTCCCCAGATTCTGGTCGTTTCCTTGCATTTGGTTCAGCAGATCATCGAATATATTATTATGATCTCAGGAACCTAAAAATGCCTCTTTATACATTCCTTGGACATGATAAGACTGTGAGTTACATCAAGTTTGTGGACAGTGTGAACCTTGTCTCTGCATCCACAGATAACACTTTGAAGCTTTGGGATTTTTCTGCATGCACATCTCAAGCTATAGACACGCCACTTCAAACATTCACAGGTCACATGAATGTGAAGAACTTTGTGGGATTGTCAGTATCTGATGGATTCATTGCCACTGGTTCGGAGACAAATGAGGTGTTTATATACAACAAGGTTTTTCCCATGCCAGCCTTGTCTTTCAAGTTTCAGAACACAGACCCATTTTCTGGGCAAGAAGTGGATGATTCTGCACAGTTCATCTCTTCTGTTTGTTGGCGCAGTCAGTCAAACACCTTAGTTGCTGCTAATTCCACAGGGAATATCAAAATTCTGGAGATGGTTTAA 2613 0.4053 MEGSSGSVWQKSNAFQVLNTSGVSDRNTRPICPDRSPYSGETSNNSSGFKKDKDRIVLALKNQASFSGVQESEVAVGPYIHSAKWADISLRQWLDKPERSVDVFECLHIFRQIVEIVNTAHCQGIVVHNVRPSCFVMSPFNNISFIESASCSDSGSVSLENGLNSLGAQIKTPAFLSSLEIHPQRILRSEVMECVRTSTTVMSNSSYMLSNAAYAARASLIEDTEENKVRNRIKTEEIEGKKQTFPLKQALLMETSWYTSPEEVAGSSSSCASDIYRLGVLLFELFCPFSSKEEKSRTMSSLIHRVLPPQLLLEWPKEATFCLWLLHPEPSSRPTLGELLQSGFLIEQRGDMEEREAAIELREKIEEQELLLEFLLLIQQRKKGVADNLQQTVSFLCSDIEEAAKQQPIFKEVVGSDLGSDDHLASSFPSMKVVESGDSADQGNIKHNVQECNSSIGDDQNNCGNVLSNNSRLMKNFKRLESEYFLMRCKSSKKPKVTDGRGSFFMTERGFVNNLASKDQCREDRIAWKNPFLDGLCKYLSFSKLKVKADLKQGDLLQSSNLVCALSFSREETFFATAGVSKKIKVFDYDSIINEDHDISYPVVEMASRSKLSSVCWNTYIKSQIASSNFEGVVQLWDVTRSRPLSEMDEHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQGINVGTIKTMANVCSVQFSPDSGRFLAFGSADHRIYYYDLRNLKMPLYTFLGHDKTVSYIKFVDSVNLVSASTDNTLKLWDFSACTSQAIDTPLQTFTGHMNVKNFVGLSVSDGFIATGSETNEVFIYNKVFPMPALSFKFQNTDPFSGQEVDDSAQFISSVCWRSQSNTLVAANSTGNIKILEMV 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1221 870 CDD WD40 563 866 - -
Prci6g1221 870 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 734 767 - -
Prci6g1221 870 ProSiteProfiles Protein kinase domain profile. 1 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1221 870 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 648 685 - -
Prci6g1221 870 SMART WD40_4 641 681 IPR001680 GO:0005515
Prci6g1221 870 SMART WD40_4 599 638 IPR001680 GO:0005515
Prci6g1221 870 SMART WD40_4 553 588 IPR001680 GO:0005515
Prci6g1221 870 SMART WD40_4 774 813 IPR001680 GO:0005515
Prci6g1221 870 SMART WD40_4 684 723 IPR001680 GO:0005515
Prci6g1221 870 SMART WD40_4 829 868 IPR001680 GO:0005515
Prci6g1221 870 SMART WD40_4 727 765 IPR001680 GO:0005515
Prci6g1221 870 ProSitePatterns Trp-Asp (WD) repeats signature. 752 766 IPR019775 -
Prci6g1221 870 SUPERFAMILY WD40 repeat-like 558 867 IPR036322 GO:0005515
Prci6g1221 870 ProSiteProfiles Trp-Asp (WD) repeats profile. 734 767 IPR001680 GO:0005515
Prci6g1221 870 ProSiteProfiles Trp-Asp (WD) repeats profile. 648 690 IPR001680 GO:0005515
Prci6g1221 870 Gene3D Transferase(Phosphotransferase) domain 1 86 354 - -
Prci6g1221 870 Coils Coil 386 406 - -
Prci6g1221 870 Gene3D - 534 870 IPR015943 GO:0005515
Prci6g1221 870 Pfam WD domain, G-beta repeat 730 765 IPR001680 GO:0005515
Prci6g1221 870 Pfam WD domain, G-beta repeat 644 681 IPR001680 GO:0005515
Prci6g1221 870 SMART serkin_6 2 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1221 870 MobiDBLite consensus disorder prediction 20 49 - -
Prci6g1221 870 SUPERFAMILY Protein kinase-like (PK-like) 88 346 IPR011009 -
Prci6g1221 870 Coils Coil 867 870 - -
Prci6g1221 870 PANTHER PROTEIN SPA1-RELATED 2 62 870 IPR044630 GO:0009640
Prci6g1221 870 PRINTS G protein beta WD-40 repeat signature 625 639 IPR020472 -
Prci6g1221 870 PRINTS G protein beta WD-40 repeat signature 752 766 IPR020472 -
Prci6g1221 870 PRINTS G protein beta WD-40 repeat signature 668 682 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1221 Prci-Chr6 8884103 8889497 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1221 634 813 Miscellaneous Gene Families AT5G08390 27.473 5.28e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Prci6g1221 WD40 0.00013 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1221 K26557 - pcin:129313660 1702.57