Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1201 ATGGAACCGGCGTGCTTTGATTGTAACGGGAATGTCTCAAGCGAGAAAAAATTGAAATCAATTTCTTCAGAGACTAGCATGGCTGATAGTGACAATGGTTGCTTTGAGTGCAACATATGCTTGGAGTCAGCACATGATCCTGTGGTCACTCTTTGTGGTCACCTGTACTGCTGGCCTTGCATATTCAGGTGGCTTCAAACTCAGAGCTCTTCTGATGAATCAGACCATCTGCAACCTTCATGCCCGGTTTGTAAATCCGACCTCTCTCATACTTCATTAGTTCCTCTTTACGGCCGAGGTGCACATAGTTCGGATTCTGAAGTCACGAAAACCCAGATGGATACAGGAATACCTAGTAGACCACCTCCTCACAGCTCGAATGCTATGTTAAATTCTGCTACTGCATCGACTTCTCAAAGTGGTCAACTCCACCCAAGTTATTTACAGTCGCAATCGCAGCCATTTCATTATCATCAATACTGCCCTCACCTTTATGAAGGACATGCTATTATTAATAGATCACCGTATCTTGGAGTTGCAGCTCTGACTAGTTTCTCCTATCCTATTATTGATATGTTCAGAGAAACGGTCTTTGCAAGGATGCTTGGGAATTCTGATTCTAATTCATTGGCATATCGTTATGTCGGTTACTATCCTCATATTACAGGTGGCAGTCATAGAATGAGGAGGCAGGAAATGCTCATTGACAAGTCTCTAAGCAGAGTATCTTTCTTTCTCCTCTGTTGTATCATTCTGTGTCTTCTCTTGTTCTGA 774 0.4289 MEPACFDCNGNVSSEKKLKSISSETSMADSDNGCFECNICLESAHDPVVTLCGHLYCWPCIFRWLQTQSSSDESDHLQPSCPVCKSDLSHTSLVPLYGRGAHSSDSEVTKTQMDTGIPSRPPPHSSNAMLNSATASTSQSGQLHPSYLQSQSQPFHYHQYCPHLYEGHAIINRSPYLGVAALTSFSYPIIDMFRETVFARMLGNSDSNSLAYRYVGYYPHITGGSHRMRRQEMLIDKSLSRVSFFLLCCIILCLLLF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1201 257 SUPERFAMILY RING/U-box 33 97 - -
Prci6g1201 257 MobiDBLite consensus disorder prediction 99 146 - -
Prci6g1201 257 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Prci6g1201 257 MobiDBLite consensus disorder prediction 104 146 - -
Prci6g1201 257 ProSiteProfiles Zinc finger RING-type profile. 37 85 IPR001841 -
Prci6g1201 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 100 IPR013083 -
Prci6g1201 257 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 15 254 IPR045103 GO:0005783|GO:0006511|GO:0061630
Prci6g1201 257 SMART ring_2 37 84 IPR001841 -
Prci6g1201 257 Pfam Zinc finger, C3HC4 type (RING finger) 37 84 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1201 Prci-Chr6 8714711 8717036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1201 9 243 C3H Transcription Factor Family AT4G27470 42.678 3.08e-51 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1201 K10666 - gmx:100817526 256.144