Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1177 ATGGAAGTTCCGGCGACCGACCCGCTTGCCCAGCTTAGTTTGCCTCCTGGTTTTCGGTTTTATCCTACCGATGAGGAGCTTCTGGTTCAGTATTTATGCCGGAAAGTAGCCGGCCACCATTTCTCTCCGCAAATTATTGGCGACATCGACTTGTACAAGTTCGACCCATGGGTTCTACCGAGCAAAGCGATTTTCGGTGAGAAAGAATGGTACTTTTTCAGCCCAAGAGACAGGAAGTACCCCAATGGATCTCGTCCGAACAGAGTAGCCGGGTCTGGGTACTGGAAAGCCACCGGAACCGATAAGATCATTACCACCGAAGGCCGGAAAGTTGGCATAAAAAAAGCTCTCGTTTTCTACGTAGGCAAAGCACCCAATGGCACCAAAACCAATTGGATCATGCACGAGTATCGCCTTCTCGAAAATTCCAGAAAGAACGGTAGCTCCAAGCTCGATGACTGGGTTCTATGCCGAATATATAGGAAGAGCTCGAGCGCACAGAAGAATATGCTTTCAAGCGTTTCGAGCAAAGAATACAGCTACAGCAACGGGTCTTCTCCCTCATCAACGTCCCACTTGGACGACATGCTTGAATCATTGCCAGAGATCAAGGACAGAAGCTTCATCCTGCCGCGTGTGAACTCGCTCAAGGCACTTCCTCAAGATGAGAAGCTGAATCTTGTCGCCGGAAATCCCATGGACTGGGCTAACCCGGCGGTACTAAACTCAGCACCCAACCTCGTCGGGTCTCAGGGGATTCTAAATTATAACCCCGGAAATGACCTTTGTGTCTCTTCCATCTCTCAACTCTGCCACATGAACTCGGCGGCCCCGGTGCGCTTGGAGAAGCTTGGGAACTCAATGGAAGATGAGGTTGAGAGCGGCGTCGGAACCCACCGGGTCGAGTGTTCGGGCGGGCACTTTCACCACAATTCGTTTGGGTTCACGAGTCAGGGATTCTCGACCAACTCCATTGACCCGTATGGATTCAGATACCCGAGCCAGTCGATCGGGCTCGGATCTCAACAGTGA 1032 0.5145 MEVPATDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSPQIIGDIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPNGTKTNWIMHEYRLLENSRKNGSSKLDDWVLCRIYRKSSSAQKNMLSSVSSKEYSYSNGSSPSSTSHLDDMLESLPEIKDRSFILPRVNSLKALPQDEKLNLVAGNPMDWANPAVLNSAPNLVGSQGILNYNPGNDLCVSSISQLCHMNSAAPVRLEKLGNSMEDEVESGVGTHRVECSGGHFHHNSFGFTSQGFSTNSIDPYGFRYPSQSIGLGSQQ 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1177 343 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 199 - -
Prci6g1177 343 SUPERFAMILY NAC domain 10 162 IPR036093 GO:0003677|GO:0006355
Prci6g1177 343 FunFam NAC domain-containing protein 72-like 23 167 - -
Prci6g1177 343 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Prci6g1177 343 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Prci6g1177 343 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1177 Prci-Chr6 8452862 8454431 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1177 1 323 NAC Transcription Factor Family AT4G27410 58.358 1.57e-124 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci6g1177 NAM 1.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1177 - - pvy:116146142 467.618