Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1078 ATGCCACTGGGAAAATTGGTAAATGGGCAAGAAATTGCAGTGAAGAGGCTTTCAAAAAGTTCAGGACAAGGAATGACTGAACTCAAGAATGAAGTAAAACTGGTCGCAAAACTTCAGCACCGGAATCTTGTAAAGCTTCTAGGATGTTGCATTGAAGGAGAAGAACAAATGCTGGTCTATGAATACATGTCCAATAGCAGCCTAGACTCCTTCATTTTTGATGAAACAAAAGGCAAAGTTCTGGATTGGTCTAAACGCTACCACATTATTTGTGGCATTGCTCGAGGCCTTTTATATCTTCATCAAGACTCTAGATTGAGAATCGTTCATAGGGATCTCAAGGCAAGTAATGTGTTACTTGATGACATGTTGAACCCAAAGATATCTGATTTTGGAATGGCAAGAACTTTTGGTGGGGACCAAACTGAAGGAAGCACAAATCGAGTAGTAGGGACCTATGGCTACATGGCACCAGAATATGCTATTGATGGGGTATTTTCAATAAAATCTGATGTCTTCAGCTTTGGTATCTTGCTGCTGGAGATAATATCCGGAAAGAGAAATAGAGGATTTTATCATGCAAACCACAGCCAAAACCTTATCGGTCATGCATGGAGAAAATGGAAAGAAGGCAATGTTTTGGAACTGATTGACAAGAACATTGAGGGATCATGCATTGCATCAGAAGTGGTAAGATGTGTCCATATTAGCCTATTATGTGTGGAAGAGCATGCAGAGGATAGGCCAAGCATGTCCTCAGTGGTTCTAATGCTGCCAAGTGAAATGGAGTTGCCTAAGCCTAAACAACCAGGTTTCTATTTGACCAAGTTTTCAATGCAAGCAAATTCTTCCCAACCAGAATTTGGAACATCCAATGAGATAACCATTACCCAATTAATTGCTCGATGA 909 0.4037 MPLGKLVNGQEIAVKRLSKSSGQGMTELKNEVKLVAKLQHRNLVKLLGCCIEGEEQMLVYEYMSNSSLDSFIFDETKGKVLDWSKRYHIICGIARGLLYLHQDSRLRIVHRDLKASNVLLDDMLNPKISDFGMARTFGGDQTEGSTNRVVGTYGYMAPEYAIDGVFSIKSDVFSFGILLLEIISGKRNRGFYHANHSQNLIGHAWRKWKEGNVLELIDKNIEGSCIASEVVRCVHISLLCVEEHAEDRPSMSSVVLMLPSEMELPKPKQPGFYLTKFSMQANSSQPEFGTSNEITITQLIAR 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1078 302 ProSiteProfiles Protein kinase domain profile. 1 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1078 302 SUPERFAMILY Protein kinase-like (PK-like) 7 273 IPR011009 -
Prci6g1078 302 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 63 266 - -
Prci6g1078 302 FunFam Uncharacterized protein 2 62 - -
Prci6g1078 302 Gene3D Phosphorylase Kinase; domain 1 2 62 - -
Prci6g1078 302 Pfam Protein tyrosine and serine/threonine kinase 9 256 IPR001245 GO:0004672|GO:0006468
Prci6g1078 302 ProSitePatterns Serine/Threonine protein kinases active-site signature. 108 120 IPR008271 GO:0004672|GO:0006468
Prci6g1078 302 Pfam Domain of unknown function (DUF3403) 261 302 IPR021820 GO:0004674
Prci6g1078 302 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 4 282 - -
Prci6g1078 302 Gene3D Transferase(Phosphotransferase) domain 1 63 268 - -
Prci6g1078 302 PIRSF TyrPK_CSF1-R 64 188 - -
Prci6g1078 302 PIRSF TyrPK_CSF1-R 233 293 - -
Prci6g1078 302 PIRSF TyrPK_CSF1-R 3 75 - -
Prci6g1078 302 SMART serkin_6 3 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1078 Prci-Chr6 7546562 7548294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1078 4 272 Receptor kinase-like Gene Family AT4G23230 62.963 1.38e-123 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Prci6g1078 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1078 - - gmx:100778155 453.751