Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1034 ATGGTTTCCCCGGAAAACTCCAATTGGTTTTTCGATTATGGCCTGATTGACGACATATCTGTTCCTGATGGGAACTTATCTGTCCATGCTTCCGGGTTCACCTGGCCGGCGCAGGCCTTGAATGGTTCTTCAAATGTCAGCACGGAAATTGATGGCTCGTTGGGGGATTCTGATGGTCTCAAAGAGCCTGGTTCAAAGAAGAGGAGTAGATCTGATTCAAATGCTGCTTCCAGTTCCAAGGCGTGTCGTGAGAAATTGCGGAGGGATAGGTTGAATGACAAGTTTCTTGAATTAGGCTCCATTTTGGAGCCTGGAAAGCCTCCCAAAACAGACAAGGTTGCTGTTTTGATTGATGCTGTACGAATGGTGACACAGCTACGGGGTGAAGCCCGGAAGTTGAAAGATTCAAATACGAGTCTTCAAGAGAAGGTAAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGTGATGAGAAACAGAGGCTCAAGGGAGAGAAAGAAAAGTTGGAGCAGCAGCTGAAAACTATCAATGTACAGCCCAGTTTCTTGCCTCCCCCGCCTGCAATTCCTGCTGCATATGCTACTGCACAAGGCCAAGGCCCAGGCAACAAGTTGGTGCCATTTATCAGCTATCCAGGAGTTGCCATGTGGCAATTTATGCCACCAGCTGCTGTGGATACCTCACAGGATCATGTGCTCCGTCCACCAGTTGCCTAA 714 0.479 MVSPENSNWFFDYGLIDDISVPDGNLSVHASGFTWPAQALNGSSNVSTEIDGSLGDSDGLKEPGSKKRSRSDSNAASSSKACREKLRRDRLNDKFLELGSILEPGKPPKTDKVAVLIDAVRMVTQLRGEARKLKDSNTSLQEKVKELKAEKNELRDEKQRLKGEKEKLEQQLKTINVQPSFLPPPPAIPAAYATAQGQGPGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1034 237 PANTHER BHLH TRANSCRIPTION FACTOR 4 237 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Prci6g1034 237 Gene3D - 78 155 IPR036638 GO:0046983
Prci6g1034 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Prci6g1034 237 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Prci6g1034 237 SMART finulus 81 132 IPR011598 GO:0046983
Prci6g1034 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 145 IPR036638 GO:0046983
Prci6g1034 237 CDD bHLH_AtILR3_like 80 155 - -
Prci6g1034 237 Coils Coil 123 178 - -
Prci6g1034 237 MobiDBLite consensus disorder prediction 46 83 - -
Prci6g1034 237 FunFam Transcription factor bHLH34 66 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1034 Prci-Chr6 7214336 7217981 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1034 1 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 71.967 1.62e-122 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci6g1034 HLH 2.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1034 - - csav:115725145 364.385