Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1033 ATGGTTTCCCCGGAAAACTCCAATTGGTTTTTCGATTATGGCCTGATTGACGACATATCTGTTCCTGATGGGAACTTATCTGTCCATGCTTCCGGGTTCACCTGGCCGGCGCAGGCCTTGAATGGTTCTTCAAATGTCAGCACGGAAATTGATGGCTCGTTGGGGGATTCTGATGGTCTCAAAGAGCCTGGTTCAAAGAAGAGGAGTAGATCTGATTCAAATGCTGCTTCCAGTTCCAAGGCGTGTCGTGAGAAATTGCGGAGGGATAGGTTGAATGACAAGTTTCTTGAATTAGGCTCCATTTTGGAGCCTGGAAAGCCTCCCAAAACAGACAAGGTTGCTGTTTTGATTGATGCTGTACGAATGGTGACACAGCTACGGGGTGAAGCCCGGAAGTTGAAAGATTCAAATACGAGTCTTCAAGAGAAGGCTGAGAAGAATGAACTTCGTGATGAGAAACAGAGGCTCAAGGGAGAGAAAGAAAAGTTGGAGCAGCAGCTGAAAACTATCAATGTACAGCCCAGTTTCTTGCCTCCCCCGCCTGCAATTCCTGCTGCATATGCTACTGCACAAGGCCAAGGCCCAGGCAACAAGTTGGTGCCATTTATCAGCTATCCAGGAGTTGCCATGTGGCAATTTATGCCACCAGCTGCTGTGGATACCTCACAGGATCATGTGCTCCGTCCACCAGTTGCCTAA 699 0.4835 MVSPENSNWFFDYGLIDDISVPDGNLSVHASGFTWPAQALNGSSNVSTEIDGSLGDSDGLKEPGSKKRSRSDSNAASSSKACREKLRRDRLNDKFLELGSILEPGKPPKTDKVAVLIDAVRMVTQLRGEARKLKDSNTSLQEKAEKNELRDEKQRLKGEKEKLEQQLKTINVQPSFLPPPPAIPAAYATAQGQGPGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1033 232 PANTHER BHLH TRANSCRIPTION FACTOR 4 232 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Prci6g1033 232 Gene3D - 74 151 IPR036638 GO:0046983
Prci6g1033 232 CDD bHLH_AtILR3_like 80 150 - -
Prci6g1033 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Prci6g1033 232 SMART finulus 81 132 IPR011598 GO:0046983
Prci6g1033 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 143 IPR036638 GO:0046983
Prci6g1033 232 Coils Coil 123 173 - -
Prci6g1033 232 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Prci6g1033 232 FunFam Transcription factor bHLH34 66 124 - -
Prci6g1033 232 MobiDBLite consensus disorder prediction 46 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1033 Prci-Chr6 7214326 7217981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1033 1 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 70.293 6.70e-117 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci6g1033 HLH 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1033 - - csav:115725145 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci6g1033 6 7214326 7217981 Prci6g1033 6 7214326 7217981 ECH