Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1013 ATGGCGGCGATGAGAGCGGCAGTAGCGGCGCCTCGCGGTCTAAGGCGGCTGTTCTCAACCACCCCAACCTCAACCTTCATTCCTCCACCGCCCTCGGCGACGGCTCCTGCTCGAGAGATGGCCGAGCCCAGCCCCAACCTCTTCGTCTCTGGGCTTAGCAAACGTACTACTACAGAAAAGCTACGGGAGGCTTTTTCCCAGTTTGGTGAAGTTGTTAGTGCTAGAGTGGTAACTGACAGAGTATCAGGTTACTCTAAAGGATTTGGCTTTGTAAGATATGCTACTGTAGAAGAAGCTGCAAAAGGCATTGAGGGCATGGATGGAAAGTTTCTGGATGGTTGGGTGATATTTGCAGAGTATGCAAAACCAAGACCATCGCCGGGACAACCTATGCCTCCTCCATATGGGCGGTAG 414 0.529 MAAMRAAVAAPRGLRRLFSTTPTSTFIPPPPSATAPAREMAEPSPNLFVSGLSKRTTTEKLREAFSQFGEVVSARVVTDRVSGYSKGFGFVRYATVEEAAKGIEGMDGKFLDGWVIFAEYAKPRPSPGQPMPPPYGR 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1013 137 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 123 IPR000504 GO:0003723
Prci6g1013 137 SUPERFAMILY RNA-binding domain, RBD 25 135 IPR035979 GO:0003676
Prci6g1013 137 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 113 IPR000504 GO:0003723
Prci6g1013 137 Gene3D - 24 129 IPR012677 -
Prci6g1013 137 FunFam RNA recognition motif-containing protein 24 133 - -
Prci6g1013 137 SMART rrm1_1 46 119 IPR000504 GO:0003723
Prci6g1013 137 MobiDBLite consensus disorder prediction 20 50 - -
Prci6g1013 137 CDD RRM_SAFB_like 46 119 - -
Prci6g1013 137 PANTHER NUCLEOLAR PROTEIN 8 28 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1013 Prci-Chr6 7007080 7010512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1013 46 122 Eukaryotic Initiation Factors Gene Family AT2G23350 40.260 3.38e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1013 - - csav:115694772 179.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci6g1013 6 7007080 7010512 Prci6g1013 6 7007080 7010512 ECH