Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0929 ATGGCTTCGTTGTTCAAGGATCTATCCAAGCTTTCAGCTTATCGAGATAGAAAATTTCCAGGAACACAAGAGGAATTTGAGCAAGCGCTTCTGTCTTCAACAACTGTTTATGTGGGAAATATGTCGTTTTACACAACAGAAGAGCAAGTTTATGAACTTTTTTCTCGTGCCGGAGAAATTAAGAAAATTATCATGGGATTGGACAAAAACACGAAAACTCCCTGTGGCTTTTGTTTTGTTTTATACTATTCTCGAGAAGATACTGAAGATGCTGTCAAATACATAAGTGGGACAATACTTGATGATCGTCCTATTCGTGTAGATTTTGACTGGGGATTCCAGGATGGAAGACAATGGGGTCGTGGTCGTAGTGGTGGTCAAGTTCGTGATGAATATCGGACTGATTATGATCCTGGTAGAGGTGGCTATGGAAAGTTAGTTCAGAAAGAGTTGGAAGCACAAAGGCAGCTTGTTGATTATGGTGCTGGTTCTTTGGGCTCTTTTCCACCAGTTTTGCAACCATCCTATGGCAGACATGGTGGTTCTCATCGGTGTGGCAGAGATTACCATAAGAAGAGACACAGAGATGATGATCGCCATGCCTACGAATCCTCAAAAAGATCATCAGATCATGAATCTCGGAGGAACTCTGATCATGACTCTAGACCGGAAAAAAATCCACGATTTCGTGAGAGTGGTGATTCTGATGATGACGAGGAAGATGATCGAAAAAGAAAATCTTAG 744 0.4153 MASLFKDLSKLSAYRDRKFPGTQEEFEQALLSSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGAGSLGSFPPVLQPSYGRHGGSHRCGRDYHKKRHRDDDRHAYESSKRSSDHESRRNSDHDSRPEKNPRFRESGDSDDDEEDDRKRKS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0929 247 MobiDBLite consensus disorder prediction 124 138 - -
Prci6g0929 247 SMART rrm1_1 35 108 IPR000504 GO:0003723
Prci6g0929 247 FunFam Nuclear cap-binding protein subunit 2 4 150 - -
Prci6g0929 247 CDD RRM_NCBP2 36 113 IPR034148 -
Prci6g0929 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Prci6g0929 247 MobiDBLite consensus disorder prediction 191 247 - -
Prci6g0929 247 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 245 IPR027157 GO:0000339|GO:0005846|GO:0045292
Prci6g0929 247 SUPERFAMILY RNA-binding domain, RBD 26 144 IPR035979 GO:0003676
Prci6g0929 247 MobiDBLite consensus disorder prediction 120 143 - -
Prci6g0929 247 Gene3D - 6 150 IPR012677 -
Prci6g0929 247 MobiDBLite consensus disorder prediction 167 247 - -
Prci6g0929 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0929 Prci-Chr6 6335823 6340122 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0929 33 109 Eukaryotic Initiation Factors Gene Family AT1G49760 28.571 4.90e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0929 K12883 - gmx:100789535 417.927