Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0910 ATGCCTGCGCAGAAGCGGTCTTTGCCCGACTCTCCGGACGATGGGGAGGTCTCAGAACTTTACAACCACCGCCATGCGAAGCAATCTCATCGGGACCGAGAGCTACAAGGCGAGGAAAAAAGGGCGGAGGAGGATGAGCAAGGGGAGCTAGGTGAAGGGGAAGAAGAAGGACAGCAGAACGAGCAAGAGCAGGACAAGGAGGAGAAAGTAGAGGATATTGACGAAAGCCCTTCTTCTGAACCCGAAGAGAAACCTGAATTTGTGTTTGTTGAACTTCTGGAAGTTCGTAAAGATGTCCAATGTCCAATTTGCCTTGGCATTATTAAGAAAACACGGACTGTCATGGAATGCTTGCACCGATTTTGCAGGGAATGCATTGACAAGTCAATGAGACTTGGGAACAATGAATGCCCTGCTTGCCGCACACATTGTGCCAGTCGTCGTTCCTTGAGAGATGATCCAAACTATGATGCTCTAATTGCTTCTCTATATCCAGATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGACTCGCAATAAGCAGATTCAAGCTTCAATTGCAAAAGTGGTTCAACGGCAATCGGAAGCACTAGTCAAGAGACGTAATAAGGATACACCACCAGGTGCATTTGTCACAAGGTCACAACGTAATCATAGGAATGTTCATGCTAGGAGACAAAACCATGGAATTGATCAAGGATCAGAAGACAATGAAGAGGAAAATGAAAATAATGGAGAAAAAGACTCATCCTCCACTGATGAGCGGAGCGCAGAACAAAAGAGAAAGCCAAAGAGAGGGACAAGAGTTCGTCCCTCCCAGCCTTCCTCATCAATGGCAAGCCCTGATGGTGGATTTATAGAAAGTGATGTCGATATAATGAGAGAAAATCAAGGAATTTCTTCAAGGCAGCTGTCAAAACCTCAGAAGCGTACCTGGGGAGGGGCTCGTTTTAGGAGTCACACTCGACATGGCAGTGGCAGTGGCAGTGGCAGCTCAAGCAAGAATTCCCGCGGTAGTCGCGTCTCTAAGTTTGTTGATTATTTAAGAAGCTTAGATGAAAGCACAGATGAGTATGATATCCATCTTATGCTTGTTTCTTTGGACAAAGGAAGTATACCAAGTTTGCAGCAGCCACACCTTTGCTGTCGGCCAACTTTGTCTGTCAAGCACCTATGTGAATACGTTGCTCGTCAGACCCTGTTACCGGCTGAAGAAGTTGAGATATTGGCGGTTAAAGGATGCTGCAGCGTCATCTGTGATAAGCCAGCTGATGAGACTTCAACCTTTCTAAGTGACGAGCTAACTACACTGACTGTAGATCCCTGCAAAGATGAACTGGAAGTTTTACAAGTACATGAAACTTTGGCAGGGCTCAAGTCCAAATGCATATCTAAAATGGAACATTTGATTCTGGCATTCAGAAGGAAGGAGAAAATGTAG 1458 0.4554 MPAQKRSLPDSPDDGEVSELYNHRHAKQSHRDRELQGEEKRAEEDEQGELGEGEEEGQQNEQEQDKEEKVEDIDESPSSEPEEKPEFVFVELLEVRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIASLYPDIEKYEEEELEFREEEKTRNKQIQASIAKVVQRQSEALVKRRNKDTPPGAFVTRSQRNHRNVHARRQNHGIDQGSEDNEEENENNGEKDSSSTDERSAEQKRKPKRGTRVRPSQPSSSMASPDGGFIESDVDIMRENQGISSRQLSKPQKRTWGGARFRSHTRHGSGSGSGSSSKNSRGSRVSKFVDYLRSLDESTDEYDIHLMLVSLDKGSIPSLQQPHLCCRPTLSVKHLCEYVARQTLLPAEEVEILAVKGCCSVICDKPADETSTFLSDELTTLTVDPCKDELEVLQVHETLAGLKSKCISKMEHLILAFRRKEKM 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0910 485 CDD RING-HC_RING1-like 98 163 - -
Prci6g0910 485 MobiDBLite consensus disorder prediction 199 292 - -
Prci6g0910 485 ProSiteProfiles Zinc finger RING-type profile. 101 141 IPR001841 -
Prci6g0910 485 MobiDBLite consensus disorder prediction 9 47 - -
Prci6g0910 485 ProSitePatterns Zinc finger RING-type signature. 117 126 IPR017907 -
Prci6g0910 485 MobiDBLite consensus disorder prediction 305 344 - -
Prci6g0910 485 MobiDBLite consensus disorder prediction 328 344 - -
Prci6g0910 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 171 IPR013083 -
Prci6g0910 485 MobiDBLite consensus disorder prediction 250 267 - -
Prci6g0910 485 SMART ring_2 101 140 IPR001841 -
Prci6g0910 485 MobiDBLite consensus disorder prediction 1 85 - -
Prci6g0910 485 MobiDBLite consensus disorder prediction 48 79 - -
Prci6g0910 485 Pfam Zinc finger, C3HC4 type (RING finger) 100 140 - -
Prci6g0910 485 PANTHER OS11G0578200 PROTEIN 1 484 IPR044592 -
Prci6g0910 485 SUPERFAMILY RING/U-box 88 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0910 Prci-Chr6 6201335 6208298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0910 94 164 C3H Transcription Factor Family AT3G23060 36.486 2.47e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0910 K10695 - gmx:100776547 589.726