Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0898 ATGGAAGCTCAGGGAAAAAATAATCAGCCTCCTCCTCCTTCCACCAAAGTCGAAAGAAAAGTCGTAGAGAAAAACAGAAGAAACCAGATGAAGACCCTCTACTCTAAGCTCAACTCTCTCCTCCCTAATCACAATCCCCAGGAAATACTGCCACTGCCTGATCAAATAGACCAGGCAATAAATTACATACAGAGTCTGAAGGAGAAGGTGGAGATGGCTCGAGAGAAGAAAGCAAGCTTAACAGGAAGCAAAAGGTCACATGCGAGCAGCTCGACGAGTGGTGCTATTGAGAAGAACAAGACTGTGGCAAGGTCACCAGAAATAGAGATTCGTAAAGTGGGTTCGTTTCTGGAGATTGTTCTGATCACTGGGTTGGATAATCAGTTCGTTTTTTATGAGATCATTCGCATACTTCATGAAGAGAACGTACAGGTCGTGAGTGCTAATTCCTCGCTCGCTGGCGACTCAATGCATCATGTAGTGCATGCAGAGATTGGGCAATCGTCGTTTCAATTCGGAGCAACCAAGGTAAGCGAGAGGCTAAAAAGATTTGTTTATGGATCATCAAGTGATGTGGAAATAAACCCAGAGTTGTGGGATTTTGACATTGCTTCTGAACCATGGGGCTTTTAA 633 0.4423 MEAQGKNNQPPPPSTKVERKVVEKNRRNQMKTLYSKLNSLLPNHNPQEILPLPDQIDQAINYIQSLKEKVEMAREKKASLTGSKRSHASSSTSGAIEKNKTVARSPEIEIRKVGSFLEIVLITGLDNQFVFYEIIRILHEENVQVVSANSSLAGDSMHHVVHAEIGQSSFQFGATKVSERLKRFVYGSSSDVEINPELWDFDIASEPWGF 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0898 210 MobiDBLite consensus disorder prediction 83 99 - -
Prci6g0898 210 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 12 82 IPR036638 GO:0046983
Prci6g0898 210 Coils Coil 56 83 - -
Prci6g0898 210 Gene3D - 8 93 IPR036638 GO:0046983
Prci6g0898 210 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 14 66 IPR011598 GO:0046983
Prci6g0898 210 MobiDBLite consensus disorder prediction 1 27 - -
Prci6g0898 210 FunFam Transcription factor bHLH162 6 92 - -
Prci6g0898 210 SMART finulus 20 72 IPR011598 GO:0046983
Prci6g0898 210 MobiDBLite consensus disorder prediction 74 100 - -
Prci6g0898 210 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 14 186 - -
Prci6g0898 210 Pfam Helix-loop-helix DNA-binding domain 17 67 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0898 Prci-Chr6 6142094 6143079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0898 14 185 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 41.573 3.04e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci6g0898 HLH 2.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0898 - - gmx:100817883 256.144