Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0886 ATGGCTGCCCTTGATCAGTATTTTGAGGAGGCTGTGTCCCAAACCGATTCCTTTGGTGAAGATAACTCTTACCCGGAAAAGTGGGAATCTGGGACAGATTCCACTGCAGGTTCTGAGAGAAATGACTCTAATGGCTTTGATTGCAATATCTGCTTGGACTCTGTGCAAGATCCAGTGGTCACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTCCATTTTAACAGTATCTCCTCTGAAGAAAACGACGAAGAACAGAGTCCCCAGTGTCCAGTATGCAAAACAGAAGTTTCCCAATCCTCACTCGTTCCACTCTATGGCCGAGGCCAAACCACAAAACCTTCCAAAGGTAAGTCCCACCATGTGGGGAATATGATTCCACAAAGACCACATGGACCTTTGTCCATGGTTGATCCTCGAAGATCATTTAGTGCTACTACTAGTGCAGTTCCCCAACCCTCTTCCCAATTTTATCATGGCCGTTATCCTTATTATCATCCTCAACAGTTCAACTCGATCCCAAGCAGTTCCACCTCAGGAATGCTTGGCATGGATGGTGCGCTCAGAAACGCATTTGATTCATGGATTGGGGTGTTCGGCGAGATGATATATGCGAGAGTGTTTGGGAACCAGGTGACAGACGTATACGCTTACCCTAATGCATATAATCTGGCAGGGAACAGTAATCCAACGATCAGAAGACATTTGATGCAAGCTGATAGGCGACTGAATAGAATCTGCCTTTTCTTGCTTTGTTCTTTAGTTTTGTGTCTTCTTTTATTCTGA 798 0.4524 MAALDQYFEEAVSQTDSFGEDNSYPEKWESGTDSTAGSERNDSNGFDCNICLDSVQDPVVTLCGHLYCWPCIYKWLHFNSISSEENDEEQSPQCPVCKTEVSQSSLVPLYGRGQTTKPSKGKSHHVGNMIPQRPHGPLSMVDPRRSFSATTSAVPQPSSQFYHGRYPYYHPQQFNSIPSSSTSGMLGMDGALRNAFDSWIGVFGEMIYARVFGNQVTDVYAYPNAYNLAGNSNPTIRRHLMQADRRLNRICLFLLCSLVLCLLLF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0886 265 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 31 111 - -
Prci6g0886 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 130 IPR013083 -
Prci6g0886 265 MobiDBLite consensus disorder prediction 12 39 - -
Prci6g0886 265 SUPERFAMILY RING/U-box 42 104 - -
Prci6g0886 265 MobiDBLite consensus disorder prediction 114 140 - -
Prci6g0886 265 ProSitePatterns Zinc finger RING-type signature. 63 72 IPR017907 -
Prci6g0886 265 SMART ring_2 48 97 IPR001841 -
Prci6g0886 265 Pfam RING-type zinc-finger 48 95 IPR027370 -
Prci6g0886 265 ProSiteProfiles Zinc finger RING-type profile. 48 98 IPR001841 -
Prci6g0886 265 CDD RING-HC_AtRMA-like 46 98 - -
Prci6g0886 265 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 262 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0886 Prci-Chr6 5992281 5995409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0886 42 265 C3H Transcription Factor Family AT4G28270 37.555 2.29e-44 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0886 K10666 - gmx:100785491 314.309