Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0875 ATGCAGCGCCACAGCAGCTCCGACGTGATTTTCATCTCATTGCTGATTCATGTTTTGCTGGTATACGCGGCTCAGGGGCAGCTTCAGCACCGGGTTTTAGACCCGCATTGGTACCCGGGCACTGCCACCTGGTACGGCGACCCCGAAGGAGACGGAAGTAACGGCGGGGCGTGTGGATACGGGTCGTTGGTCGACGTGAAGCCGATGAAGGCGCGAGTTGGGGCTGTGGGTCCCGTGCTGTTCATGACCGGAGAAGGCTGTGGAGCCTGCTACAAGGTGAAATGCTTGGACAAGAGCATATGCTCCAAGCGAGCCGTGACGGTGATAATCACCGACGAGTGCCCTGGCTGCCCCTCCGACCGGACCCACTTTGACCTCAGTGGCGCAGCATTTGGCCGCATGGCTCTGGCTGGCGAGAACTCTCTGCTCCGAGACCGTGGTCAAATCCCAGTCGTTTACCGAAGAACACCGTGTAAATATCCTGGTAGAAACATTGCCTTCCATGTTAATGAAGGATCCACACCATTTTGGCTATCTCTTTTGGTAGAGTTTGAGGATGGAGATGGAGACATTGGCTTTTTGCATATTCAAGAAGCAGGGTCTAGTGAGTGGCTTCAGATGAATCATCTATGGGGTGCGAATTGGAATATTATTGGAGGGCCTTTGAAGGGACCATTATCTGTGAAACTAAGCACATCCACTGGGAAAACACTATCTGCCAGAGATGTTATCCCTAGCAACTGGGCTCCAAGAGCCACTTACACATCTCGTCTCAACTTCTTCCACCATTAA 792 0.529 MQRHSSSDVIFISLLIHVLLVYAAQGQLQHRVLDPHWYPGTATWYGDPEGDGSNGGACGYGSLVDVKPMKARVGAVGPVLFMTGEGCGACYKVKCLDKSICSKRAVTVIITDECPGCPSDRTHFDLSGAAFGRMALAGENSLLRDRGQIPVVYRRTPCKYPGRNIAFHVNEGSTPFWLSLLVEFEDGDGDIGFLHIQEAGSSEWLQMNHLWGANWNIIGGPLKGPLSVKLSTSTGKTLSARDVIPSNWAPRATYTSRLNFFHH 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0875 263 CDD DPBB_EXPB_N 37 158 - -
Prci6g0875 263 Pfam Expansin C-terminal domain 165 245 IPR007117 -
Prci6g0875 263 Pfam Lytic transglycolase 78 153 IPR009009 -
Prci6g0875 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 163 IPR007112 -
Prci6g0875 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 256 IPR007117 -
Prci6g0875 263 FunFam Beta-expansin 3 160 261 - -
Prci6g0875 263 Gene3D - 23 158 IPR036908 -
Prci6g0875 263 SUPERFAMILY Barwin-like endoglucanases 32 162 IPR036908 -
Prci6g0875 263 PANTHER EXPANSIN-B3 16 260 - -
Prci6g0875 263 FunFam Expansin B3 23 159 - -
Prci6g0875 263 Gene3D - 159 257 IPR036749 -
Prci6g0875 263 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576
Prci6g0875 263 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Prci6g0875 263 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576
Prci6g0875 263 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576
Prci6g0875 263 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Prci6g0875 263 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576
Prci6g0875 263 PRINTS Major pollen allergen Lol pI signature 135 150 IPR005795 GO:0005576|GO:0019953
Prci6g0875 263 PRINTS Major pollen allergen Lol pI signature 167 182 IPR005795 GO:0005576|GO:0019953
Prci6g0875 263 PRINTS Major pollen allergen Lol pI signature 183 198 IPR005795 GO:0005576|GO:0019953
Prci6g0875 263 PRINTS Major pollen allergen Lol pI signature 113 128 IPR005795 GO:0005576|GO:0019953
Prci6g0875 263 PRINTS Major pollen allergen Lol pI signature 232 249 IPR005795 GO:0005576|GO:0019953
Prci6g0875 263 SUPERFAMILY PHL pollen allergen 163 256 IPR036749 -
Prci6g0875 263 SMART dpbb_1 73 153 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0875 Prci-Chr6 5965497 5968130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0875 12 198 Expansin Gene Family AT4G28250 66.845 4.93e-92 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0875 K20628 - gmx:100804525 458.373