Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0870 ATGGATAGATTCACTAATGATTTTGATGGTACTCCAATCGGAGAAAGTCCAGACTCGAGGCTCGAGGGACAACCATGGAAGCCAGTTTTTGATGAAGCTTCCATCTCAAATCGGCCGGAGAGTCAGATCCTGCATCAGCCCTCTGCTTCTCTCAATGTGCCTTGCCCTCCTTCATCTTCTTCAGGAATCACGTTTCCCTTCGCCCTTGATGAATCTCCGTACCAATCTGCAACCACGAATAATCAACTTATGAAATCTTTCGCATGCCCACCATTTTTAGCATCAGAGTCAGAACGTGATCAGCATCATCATCATCATCAGCAGCAGCAGCAGCAGCTTCCACCATTACATACGACTAAGCTCTACAGGGGAGTCAGGCAACGCCATTGGGGCAAATGGGTGGCTGAGATTCGTCTTCCTAACAGTAGAAATCGCCTCTGGTTAGGCACATTTGATACTGCAGAAGATGCTGCTCTGGCTTATGATCGCCAGGCCTTTAAGCTCCGAGGACAGAATGCTCGGCTCAATTTCCCCGAGCTCTTTCTCAATAAAGTTCCATATTCAACTGCTGCTTCTTCCTCCTCCTCCTCAAAGCAGCCTGAACCAGCAGGAGAGAAGCAAGAAGTTGCTAGAGATAATGCAGCAGAGAAAGGGGTTTCAGAGGAGCAGAAATTGGTTTTGGGAGACATGGAAGCTTGGTACAATGCGATTCCACAAGGTTGGGGACCTGAGAGCCCTGTGTGGGATGATTTAGACCCCACCAACAACCTTCTGTTTCAGTCACAGTTTCCTTTTGGAAATCCAAGCCAGCAAGAATTTCATGATGTTAATGAATAG 837 0.4743 MDRFTNDFDGTPIGESPDSRLEGQPWKPVFDEASISNRPESQILHQPSASLNVPCPPSSSSGITFPFALDESPYQSATTNNQLMKSFACPPFLASESERDQHHHHHQQQQQQLPPLHTTKLYRGVRQRHWGKWVAEIRLPNSRNRLWLGTFDTAEDAALAYDRQAFKLRGQNARLNFPELFLNKVPYSTAASSSSSSKQPEPAGEKQEVARDNAAEKGVSEEQKLVLGDMEAWYNAIPQGWGPESPVWDDLDPTNNLLFQSQFPFGNPSQQEFHDVNE 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0870 278 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Prci6g0870 278 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Prci6g0870 278 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 23 197 - -
Prci6g0870 278 MobiDBLite consensus disorder prediction 1 27 - -
Prci6g0870 278 MobiDBLite consensus disorder prediction 190 221 - -
Prci6g0870 278 FunFam Ethylene-responsive transcription factor 2 120 179 - -
Prci6g0870 278 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
Prci6g0870 278 CDD AP2 120 180 IPR001471 GO:0003700|GO:0006355
Prci6g0870 278 Pfam AP2 domain 122 170 IPR001471 GO:0003700|GO:0006355
Prci6g0870 278 Gene3D AP2/ERF domain 121 179 IPR036955 GO:0003700|GO:0006355
Prci6g0870 278 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
Prci6g0870 278 MobiDBLite consensus disorder prediction 204 221 - -
Prci6g0870 278 MobiDBLite consensus disorder prediction 96 117 - -
Prci6g0870 278 SUPERFAMILY DNA-binding domain 121 179 IPR016177 GO:0003677
Prci6g0870 278 MobiDBLite consensus disorder prediction 259 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0870 Prci-Chr6 5928680 5930154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0870 110 252 AP2-EREBP Transcription Factor Family AT4G28140 59.589 1.96e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci6g0870 AP2 3.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0870 - - pcin:129312494 545.043