Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0801 ATGATGAGAGGCCCTTACTATGATAAAAATGGAGTGAAGAGAGGTGCGTGGAGTAAAGAAGAGGATGAAAGGTTAAGAGCATATGTTGAGAGACATGGCCACAGTAATTGGCGTCAACTCCCCAAACGCGCAGGTTTATCAAGGTGTGGAAAGAGTTGCCGACTTCGCTGGCTAAATTACCTGCGCCCGGATGTAAAACGCGGAAATTACACCAAAGAAGAAGACGAAATCATCATCAAATTACATGAACAACATGGAAATAAATGGTCTTTGATTGCCGAAAGATTACCAGGGAGAACTGACAACGAGGTCAAGAACCACTGGCATAGCCACCTGAAGAAGCACTTGGAGTGCAATCACGAAGAAAATTTTGAGTTCAAAACAAAGCCCATTGATATTTGTGGAGGAGAAGCAACCAAGTATTTCGAACCTGAAAGTTGTTTTCTTGGTTTTGATGCTTCTTCCTCCAGCAATATCTCGGGAAGCTCACCACCCATCTACCGTTCATCTTCAGCCTCCGCCTTCGGAGAAGAAAGCGTTGCTGATGCTGCCTGGGAAATATTTGAAGAATTCGGCGATTTCTGGACCCAACCATTTCTTCCAGAAAATACGTATGAGCAGGATAACTATTGTAGTCTGAACCATGCACCAAGTGTAGCAGATGTGGACGAATATTCCTCATACCTCTTCGATAATACTGAGTTTTTGTGCCAAGTGATGCAAGAATTTCCAGGTGACCCTAAAAAGGATATACAAGTAAATGGTAGTTCTTCCATTTGTTTCTTCTGA 789 0.4297 MMRGPYYDKNGVKRGAWSKEEDERLRAYVERHGHSNWRQLPKRAGLSRCGKSCRLRWLNYLRPDVKRGNYTKEEDEIIIKLHEQHGNKWSLIAERLPGRTDNEVKNHWHSHLKKHLECNHEENFEFKTKPIDICGGEATKYFEPESCFLGFDASSSSNISGSSPPIYRSSSASAFGEESVADAAWEIFEEFGDFWTQPFLPENTYEQDNYCSLNHAPSVADVDEYSSYLFDNTEFLCQVMQEFPGDPKKDIQVNGSSSICFF 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0801 262 CDD SANT 69 112 IPR001005 -
Prci6g0801 262 FunFam Transcription factor RAX3 7 67 - -
Prci6g0801 262 Gene3D - 69 130 - -
Prci6g0801 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Prci6g0801 262 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Prci6g0801 262 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci6g0801 262 CDD SANT 16 61 IPR001005 -
Prci6g0801 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Prci6g0801 262 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci6g0801 262 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci6g0801 262 SMART sant 13 63 IPR001005 -
Prci6g0801 262 SMART sant 66 114 IPR001005 -
Prci6g0801 262 Gene3D - 14 66 - -
Prci6g0801 262 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Prci6g0801 262 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0801 Prci-Chr6 5497048 5498302 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0801 1 116 MYB Transcription Factor Family AT4G38620 67.241 1.66e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci6g0801 Myb_DNA-binding 9.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0801 K09422 - gmx:100781032 233.417