Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0800 ATGGTGAGAGGTCCTTTCATCGACGCAAATGGAGTTAAAAAAGGTGCATGGAGCGAAGAAGAAGACCAGAAGCTTATTTCTTATATTCAGACCCACGGCCATCCTAATTGGCGCCAACTCCCCAAGTTAGCAGGCTTGGCGAGGTGTGGAAAGAGTTGCAGGCTTCGATGGATGAACTACCTGCGACCAAATCTCAAACGTGGGAACTACACTCCACAAGAGGAGGAACTCATCCTCAAACTTCACGAACAGCATGGAAATAAGTGGTCGCTGATTGCTGAGAAGCTGCCTGGAAGAACCGACAACCACATAAAGAATCACTGGCACAGCCAACTCAAGAGGCGATCGAGGGACAGAGGAAGGAATGATTCTGAGGTGAAAGGCAAGAAAACAGGTCGTAACAATGCGACCAAGCATCCAGAATCTGATATTGTGAAAGTCGTGAATGAGTTGAATAATATATTAGAGAGCTCATCCTTGAACTGGACGGAAACGACGTCGTCGTGGACCACGGCAGATCAAGACAACTCTGTTTCTCTGCCTTCTAATGATATAGGATCGACCGCCAAAAATTCCCCGGAAGAGTATAACAGCGTGGCTTCACGGGAAGCCAGCAGATTTCAAGAATTCAGCGGCGATTTTTGGACCGAGCCGTTTATATCAGAAGATATGTACAGTGAATATTGCTATCCACATATTGGGGGCGACGGTGGCAGCGCCGGCGGAGACATTTTTTCATATGATGGGGCACTCTTGTTTTTCTAA 765 0.4719 MVRGPFIDANGVKKGAWSEEEDQKLISYIQTHGHPNWRQLPKLAGLARCGKSCRLRWMNYLRPNLKRGNYTPQEEELILKLHEQHGNKWSLIAEKLPGRTDNHIKNHWHSQLKRRSRDRGRNDSEVKGKKTGRNNATKHPESDIVKVVNELNNILESSSLNWTETTSSWTTADQDNSVSLPSNDIGSTAKNSPEEYNSVASREASRFQEFSGDFWTEPFISEDMYSEYCYPHIGGDGGSAGGDIFSYDGALLFF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0800 254 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 194 - -
Prci6g0800 254 CDD SANT 16 61 IPR001005 -
Prci6g0800 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Prci6g0800 254 MobiDBLite consensus disorder prediction 100 143 - -
Prci6g0800 254 SMART sant 13 63 IPR001005 -
Prci6g0800 254 SMART sant 66 114 IPR001005 -
Prci6g0800 254 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Prci6g0800 254 Gene3D - 69 143 - -
Prci6g0800 254 FunFam MYB-related transcription factor 13 66 - -
Prci6g0800 254 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci6g0800 254 Gene3D - 7 67 - -
Prci6g0800 254 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci6g0800 254 MobiDBLite consensus disorder prediction 116 143 - -
Prci6g0800 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Prci6g0800 254 MobiDBLite consensus disorder prediction 166 194 - -
Prci6g0800 254 CDD SANT 69 109 IPR001005 -
Prci6g0800 254 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci6g0800 254 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0800 Prci-Chr6 5486806 5488326 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0800 1 115 MYB Transcription Factor Family AT1G06180 67.826 4.71e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci6g0800 Myb_DNA-binding 7.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0800 K09422 - gmx:100781032 239.195