Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0797 ATGAAGTTGGTTGCTTATATTACTAGGTATGGCTGTTGGAATTGGCGACTACTCCCCAAGTTTGCTGGATTGGCAAGGTGTGGAAAGAGTTGCAGGCTTCGGTGGATGAACTACTTAAGACCAGACATCAAAAGAGGGAATTACACTCCCCTAGAAGACGACACTATCATCACACTTCACCAAAAGCTGGGTAACAAGTGGTCAAAGATTGCTGCTTGTTTACCGGGAAGAACTGATAACGAAATAAAAAACCACTGGCACACCAATCTCAAGAAGAGAGCTCAAGGAAACTCAGCTGGACATGAAAAGGATAAAGCCTTCAAGTCAAAGGATCAAATTCCACTTGAATCGAGCCCAGAGATCTGCGACTCATCAATCACAATATGTACTACAACTGCTCCTTCTTCACAGTGTGATACATCAGCAGGCGAGTCCCAGATCTCAAGTACTTTCCCAGTGCAGCTCACTGATCATGCCGGTGGTTTCAGCAGTAATAATGAAAATTTGGTCGGGGAAGATTGTCATAACTTGGCTACTCCGGATGCGTTCGTTGAGACTATGAGTGAAAATTTTTGGACAGAGCCGTACATGGTTGACGTTTCCTACGTCCCCAATGAAGAATTTTTACCGTTGTCCCCTGAATATGAGTACAATGCACAGCTTTGGGAACACAGTGGCTCGCATGACGAATATATTGACTTATCTTGA 708 0.4407 MKLVAYITRYGCWNWRLLPKFAGLARCGKSCRLRWMNYLRPDIKRGNYTPLEDDTIITLHQKLGNKWSKIAACLPGRTDNEIKNHWHTNLKKRAQGNSAGHEKDKAFKSKDQIPLESSPEICDSSITICTTTAPSSQCDTSAGESQISSTFPVQLTDHAGGFSSNNENLVGEDCHNLATPDAFVETMSENFWTEPYMVDVSYVPNEEFLPLSPEYEYNAQLWEHSGSHDEYIDLS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0797 235 CDD SANT 47 90 IPR001005 -
Prci6g0797 235 ProSiteProfiles Myb-like domain profile. 1 39 IPR001005 -
Prci6g0797 235 SMART sant 1 41 IPR001005 -
Prci6g0797 235 SMART sant 44 92 IPR001005 -
Prci6g0797 235 SUPERFAMILY Homeodomain-like 2 86 IPR009057 -
Prci6g0797 235 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 175 - -
Prci6g0797 235 Gene3D - 1 44 - -
Prci6g0797 235 ProSiteProfiles Myb-like domain profile. 40 90 IPR001005 -
Prci6g0797 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 39 IPR017930 -
Prci6g0797 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 94 IPR017930 -
Prci6g0797 235 Pfam Myb-like DNA-binding domain 45 90 IPR001005 -
Prci6g0797 235 Pfam Myb-like DNA-binding domain 2 39 IPR001005 -
Prci6g0797 235 CDD SANT 2 39 IPR001005 -
Prci6g0797 235 Gene3D - 47 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0797 Prci-Chr6 5462949 5466155 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0797 3 207 MYB Transcription Factor Family AT1G06180 42.439 5.63e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci6g0797 Myb_DNA-binding 2.4e-14 CL0123