Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0744 ATGGGCATCGCTTTTCTAACCCGAAATTCCAAATTTCTCACAATGGATTGTTCTTGTTTACTGCCGAATCTAGTTCATGGGGGATTTGTTCTTTTCGTGTTCATCTCTCTGCTCCTGAAGTTGTTCGCACTTGCCAGGTGCTTTGTTCTCGGAGGATTTTCGAGTTTTTTCCCCAAAGCGGAGGCCCTTTTGATTGCAAGTTTAGGCCTAATAATTATGGTGAGGTTACTATTCCTCCTGTTCTTCTGTCTCTGGATTTCCACACAAGTGGGGGCTAGAACCGGAAGTATCATTACAAATAAGACTAAAGTACCTTCGAGGCCAAGTGTTGTGAAAATCGGAGCACTGCTTACTTTCCATTCGGTCATTGGAAAATCAGCAAAACCTGCAATTTTAGCTGCCATCGATGATGTTAATAATGATACAAGCATTCTTCCTGGTACTAAAATGGAAGTTATTTTACATGATACAAACTGCAGCGGGTTTCTCGGCACAGTGGAAGCTCTGGGGTTGATGGAGAATGACGTGGTTGCTGCTGTTGGTCCACAGTCATCTGGAATAGCTCATGTCATCTCCCATGTTGTTAATGAACTCCATGTGCCTCTCCTGTCATTTGGGGCTACAGACCCTACTCTTGCTTCTCTGCAGTACCCATATTTTGTCCGCACTACGCAGAATGACTATTTTCAGATGAACGCAATTGCAGACTTGATTGACTACTTTGGTTGGAAGGAGGTGATTGCTATCTTTGTGGATGATGATAATGGAAGAAATGGAATTTCTGCACTTGGTGATGCCCTTGCAAAGAAGCGTGCCAAGATCTCTTATAAGGCTGCCTTTACTGCTGGAGCCTCTACAAGTAATATCAGTGACTTGTTAAATGGGGTAAACTTAATGGAATCACGGGTCTATGTTGTCCACGTTAACCCTGATACTGGTTTGTCCATTTTTTCTATTGCGAAGAAAATTGGTATGATGGGCAATGGTTATGTTTGGATTGCAACAGATTGGCTTCCTTCGGTTCTAGATGCATCAGAAGCAGCTGATCCTGACACAATGAATGTCTTACAAGGGGTTATTGCTTTACGCCATCATACTCCTGACACTGATCTCAAGAAGAGGTTTATCTCTAGGCTTAAAAACAGTAAATACAAGGAGGACGCTACGAGCTTTAATTCCTATGCACTATATGCATATGATTCAGTTTGGTTAGCAGCACGAGCTTTTGATGCACTTCTCAATGAGGGAGGAAATGTATCTTTTAGTAATGACCCCAGATTGCATGGCACAAATGGAAGCACGTTGCATTTATCATCACTTCGTACTTTTGATGGTGGCCCACAGTTTCTCCAGAAAGTCCTGGCAATGAATTTCACCGGTCTGAGTGGTCAGATTCAGTTTGACGAGGACAAGAATTTAATTCATCCAGCATATGATATTCTAAACATTGGTGGATCTAGCCGTAGAATAGGTTATTGGTCTAATTACTCAGGTCTATCAGTTTTAGCACCTGAAATTTTATATACAAAACCACCTAACATTTCATCTAGCAATCAACATCTCTACGGTGTGATATGGCCGGGGGAGACTACAACAAGACCCCGTGGATGGGTGTTTCCCAACAATGGGAAGCCACTGCGAATAGCAGTACCAAACCGAATAAGCTATCTGGAGTTTGTTGCCAAAAACAAGAACCCTCCAGGAGTAAGAGGTTATTGCATTGATGTTTTTGAAGCAGCCTTAAACCTGCTTCCATATCCTGTCCCACGACAATATATATTATATGGAGATGGTCATAGAAATCCCAACTACGATGCACTTACGAATGAGGTTGCACAAAATAATTTTGATGCAGCTGTTGGAGATGTTACAATTGTCACAAACAGGACAAGGATTGTGGATTTTACTCAGCCTTTCGTGGAATCAGGGTTGGTTGTAGTTGTTGCTGTTAAGGAGGAGAAGTCAAGCCCTTGGTCATTTCTCAAACCATTCACTGCTCAAATGTGGTGTGTCACCGGTGCCTTCTTTCTCTTTGTGGGAGCTGTGGTATGGATTCTTGAGCACCGGCTCAATCATGAGTTCCGTGGTTCTCCAAGGAAACAACTTATGACCATTTTTTGGTTTAGCTTCTCCACGATGTTTTTCTCACATAGAGAAAACACTGTGAGCACTTTGGGGAGGTTGGTGTTACTGATATGGCTTTTTGTGGTATTAATCATCAATTCAAGCTACACTGCGAGCTTGACATCGATCCTCACAGTGCAGCAACTATCATCTCAAATTGAAGGAATTGACAGCTTGATTTCAAGCACTCAACCTATTGGAATTCAAGATGGGTCATTTGCACGGAAGTGCCTGATAGATGATCTGAATATAGCTGAATCTAGGATTGTGACGTTGAAAAACCAGCAGGATTATATTGATGCGCTTCAGCGTGGACCCAAGGGTGGAGGGGTGGTGGCAGTTGTTGACGAGCTTCCTTATATTGAGATATTGATGTCCAAAACTAATTGTAAATTCAGAACTGTAGGTCAGGAGTTCACTAAAAGTGGATGGGGATTTGCGTTCCAGAGGGACTCTCCCCTTTCTGTGGACTTGTCAACTGCCATTCTTCAGCTCTCAGAGAATGGCGATTTGCAGAAGATCCACGACAAATGGCTCTCAAAATTTACATGCGCTGCACAAGTCAATGATATTGATTCAAACAAGCTCTCTCTCAGTAGCTTCTGGGGCCTCTTCCTCATATGCGGGACTGCATGTTGCCTTGCTCTGGTCATATTCTGTATCAGGGTGTTCTGTCAATACATGAAATTTATCCCTGATGATGAGGAGGCTGAAGAGAATATTGAGCCAGTCAGAGCTAGAAGGACAAGTAGATCCACTAGCTTCAAGAACATATTTGGTTTTGTAGACAAAAGAGAAGCCGAAATAAAGGAGATATTGAAGCACAAGAATAAGAAACGGCGTCGCAGCCAGAGCGTAGACATGCACTCCAATTATTCAAACAGCTAA 3012 0.4266 MGIAFLTRNSKFLTMDCSCLLPNLVHGGFVLFVFISLLLKLFALARCFVLGGFSSFFPKAEALLIASLGLIIMVRLLFLLFFCLWISTQVGARTGSIITNKTKVPSRPSVVKIGALLTFHSVIGKSAKPAILAAIDDVNNDTSILPGTKMEVILHDTNCSGFLGTVEALGLMENDVVAAVGPQSSGIAHVISHVVNELHVPLLSFGATDPTLASLQYPYFVRTTQNDYFQMNAIADLIDYFGWKEVIAIFVDDDNGRNGISALGDALAKKRAKISYKAAFTAGASTSNISDLLNGVNLMESRVYVVHVNPDTGLSIFSIAKKIGMMGNGYVWIATDWLPSVLDASEAADPDTMNVLQGVIALRHHTPDTDLKKRFISRLKNSKYKEDATSFNSYALYAYDSVWLAARAFDALLNEGGNVSFSNDPRLHGTNGSTLHLSSLRTFDGGPQFLQKVLAMNFTGLSGQIQFDEDKNLIHPAYDILNIGGSSRRIGYWSNYSGLSVLAPEILYTKPPNISSSNQHLYGVIWPGETTTRPRGWVFPNNGKPLRIAVPNRISYLEFVAKNKNPPGVRGYCIDVFEAALNLLPYPVPRQYILYGDGHRNPNYDALTNEVAQNNFDAAVGDVTIVTNRTRIVDFTQPFVESGLVVVVAVKEEKSSPWSFLKPFTAQMWCVTGAFFLFVGAVVWILEHRLNHEFRGSPRKQLMTIFWFSFSTMFFSHRENTVSTLGRLVLLIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSTQPIGIQDGSFARKCLIDDLNIAESRIVTLKNQQDYIDALQRGPKGGGVVAVVDELPYIEILMSKTNCKFRTVGQEFTKSGWGFAFQRDSPLSVDLSTAILQLSENGDLQKIHDKWLSKFTCAAQVNDIDSNKLSLSSFWGLFLICGTACCLALVIFCIRVFCQYMKFIPDDEEAEENIEPVRARRTSRSTSFKNIFGFVDKREAEIKEILKHKNKKRRRSQSVDMHSNYSNS 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0744 1003 CDD GluR_Plant 544 887 - -
Prci6g0744 1003 Gene3D - 130 475 - -
Prci6g0744 1003 FunFam Glutamate receptor 657 787 - -
Prci6g0744 1003 Pfam Bacterial extracellular solute-binding proteins, family 3 601 888 IPR001638 -
Prci6g0744 1003 CDD PBP1_GABAb_receptor_plant 112 501 IPR044440 -
Prci6g0744 1003 FunFam Glutamate receptor 541 657 - -
Prci6g0744 1003 Pfam Ligand-gated ion channel 889 920 IPR001320 GO:0015276|GO:0016020
Prci6g0744 1003 SMART GluR_14 547 889 IPR001320 GO:0015276|GO:0016020
Prci6g0744 1003 PIRSF IGluLR_plant 70 1003 IPR017103 -
Prci6g0744 1003 Pfam Receptor family ligand binding region 128 484 IPR001828 -
Prci6g0744 1003 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 315 338 - -
Prci6g0744 1003 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 184 212 - -
Prci6g0744 1003 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 124 140 - -
Prci6g0744 1003 SUPERFAMILY Periplasmic binding protein-like I 106 538 IPR028082 -
Prci6g0744 1003 Gene3D - 226 499 - -
Prci6g0744 1003 MobiDBLite consensus disorder prediction 984 1003 - -
Prci6g0744 1003 Coils Coil 783 803 - -
Prci6g0744 1003 FunFam Glutamate receptor 226 386 - -
Prci6g0744 1003 Gene3D - 657 777 - -
Prci6g0744 1003 FunFam Glutamate receptor 783 891 - -
Prci6g0744 1003 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 111 961 IPR015683 -
Prci6g0744 1003 SUPERFAMILY Periplasmic binding protein-like II 522 887 - -
Prci6g0744 1003 Gene3D - 780 890 - -
Prci6g0744 1003 Gene3D - 541 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0744 Prci-Chr6 4966945 4971948 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0744 107 854 Ion Channels AT1G05200 69.426 0.0 1135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0744 K05387 - qsa:O6P43_000581 1437.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci7g2263 7 35919091 35923607 Prci6g0744 6 4966945 4971948 CCT
Prci6g0744 6 4966945 4971948 Prci7g2265 7 35919091 35922771 CCT
Prci6g0744 6 4966945 4971948 Prci6g0744 6 4966945 4971948 ECH