Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0726 ATGGAGCTGCGTCCTCGTAATCGACTTTCTACTCCTAATATTGATGCAGCAATGAATGAACAACAGCCCAATGATGCCTCTGGAGAAGCTAAAACTGCTAGCCATTGTAGCAATAATGCAAATGAAGTCTCTTCAGGTTCACATTCCAGTTTCGAAGATGATGAAGCTTTGAACTCCTCTCTTGACTTAAATAAAGAACCTACTTCAAGCTTTTGCGCTTCTGATGGGGTAGACGACACCTCTGATTCATCCAATAGCTGGGATAGTCCGTATAGAAAGATAAGAGGAAAGAAAAGAAGAAAACGTAGCTCAAAAAATGGAGAGTCCAATCAGGACAAGGGAGTGTTGCAGTATGGAGACAATGATGGCTCCACAAGAGTTCAGCAGCAATCAACTGACGATCATTTGGGTAGCCTTGGAAAGAAGAAGAAAAGAAAAAGAGCAAGAAAAGATCCGCAGCCAGTGTTGTTATGGAAGGTATGGGAAGAGCAGCATGAGAGATGGATCGATGAGAATTTATCTGTAGATGTTGACTTGGATCATCATAATGAACTAATGAAAGAAACTGCCGAGCCTTCCTCTGACCTTACTATGCCTTTACTAAGATACCAAAAGGAATGGCTAGCATGGGCTCTTAAACAAGAGAATTCTAAAATTAGGGGGGGTATTCTTGCAGATGAAATGGGGATGGGAAAGACTATTCAAGCAATTTCTCTTGTCCTTGCCAAACGTGAAATCCGGCAAATGGTTTGTGAATCAGATGAAACATCCTCTTTGCCAAGTTCATCTACAGTCTTGCCTGGGATCAAAGGAACGCTTGTAGTTTGTCCTTTGGTTGCTGTCACTCAGTGGGTTAGTGAGATTGATAGGTTTACTCTGAAAGGAAGCACCAAGGTGCTAATTTATCATGGGGCCAATAGAGGGAAGTGTAGGGAAGAGTTCTCGGAGTATGATTTTGTAATAACTACATACTCTATTGTTGAATCAGAATACAGGAAGCATATGATGCCTCCTAAGGAGAAGTGCCCATATTGTGGCAAATCTTATAGCCACTCAAAGTTATCTTTTCACCAGAGATATTATTGTGGGCCTGATGCTGAGAGAACAGAAAAACAATCGAAGCAATTGAAGAAAAAGCAAAGAAAAGTTGATACAAAAAAAAATGTTCAGATGAAAATGGGCCCAGATAATTCAGATACCACAGGCAAGGGGAAGTCACTTTTACATGCTGTAAAGTGGCAGCGGATCATTTTGGATGAGGCACACTATATAAAATCTAGACAATGTAACACTGCAAAAGCAATTCTTGCTCTTGAGTCTTCCTATAGATGGGCATTAAGTGGAACTCCCCTTCAGAATCGTGTGGGAGAGCTGTATTCTCTGATACGTTTCCTGCAAGTAGTTCCTTATTCCTATTACTTGTGTAAGGACTGTGATTGCAGGATTCTTGATCATAGTTCTAAGGAATGTTCAAACTGCCAGCACAGTTCTGTTAGACATTTCTGTTGGTGGAATAAATATGTAGCCACACCAATTCAATTATATGGAAACAGTGATGCTGGAAGGAGAGCAATGATATTGCTTACGCACAAGGTTTTAAAAAATATAATATTAAGACGTACTAAAATAGGCCGGGCTGCTGATCTCGCACTTCCACCAAGAATTGTGTCGTTGAGAAAGGACAGCCTGGATATAAAAGAGCAAGACTATTATGAATCATTATACAATGAAAGTCAGGCACAGTTTAATACGTATGTGGAATCAAATACCTTGACGAATAACTATGCTCATATATTTGACCTCCTCACCAGGCTTCGACAGGCTGTTGATCATCCATACCTTGTGGTATATTCTCAAGCTGCATCATTGAAAGCTGGGGTTGAGGTTAGCAATGACAATGTTGAACAAGTATGTGGCCTTTGTCATGAGCCGGTAGAAGATCCTGTGGTTACCTCATGTGAACACATCTTTTGTAAGGCATGCTTGATAGACTTCTCTGCTTCCTTGGGGCAAGTGTCATGCCCTTCATGCTCCAAATTACTTACTGTTGATTTAACTTCCAATATTGATGTTGGGGATCAGTCTAGAAAAACAACAATAAAGGGTTTCAGATCCTCAAGCATTTTAAATAGAATTCGGCTTGAGAACTTTCAGACAAGTACTAAAATAGAGGCATTGAGAGAAGAAATTAGATTTATGGTAGAAAGGGATGGCTCTGCAAAAGGGATTGTTTTTAGCCAGTTCACTTCATTCTTGGATCTCATAAACTACTCCCTTCTTAAGTCTGGCGTGTCTTGCGTTCAATTGAATGGAAGCATGTCATTAACTGCCCGGGATGCTGCGATTAAGAGATTTACTGATGATCCAGAATGCAAAATTTTTCTCATGAGCTTGAAAGCTGGTGGCGTTGCCCTCAATTTGACCGTAGCATCACATGTTTTCATTATGGACCCTTGGTGGAACCCAGCCGTGGAGCGTCAGGCTCAAGATAGAATTCACCGAATAGGGCAATATAAACCAATCAGAATTGTCAGGTTTGTAATTGAAAACACTATTGAGGAGAGGATTTTGAAGCTGCAAGAGAAGAAGGAGCTAATTTTTGAAGGGACTGTTGGCGGCTCCGCCGAAGCTCTGGGCAAACTCACGGAGGCGGACATGAGATTTCTGTTTATTACCTGA 2679 0.4099 MELRPRNRLSTPNIDAAMNEQQPNDASGEAKTASHCSNNANEVSSGSHSSFEDDEALNSSLDLNKEPTSSFCASDGVDDTSDSSNSWDSPYRKIRGKKRRKRSSKNGESNQDKGVLQYGDNDGSTRVQQQSTDDHLGSLGKKKKRKRARKDPQPVLLWKVWEEQHERWIDENLSVDVDLDHHNELMKETAEPSSDLTMPLLRYQKEWLAWALKQENSKIRGGILADEMGMGKTIQAISLVLAKREIRQMVCESDETSSLPSSSTVLPGIKGTLVVCPLVAVTQWVSEIDRFTLKGSTKVLIYHGANRGKCREEFSEYDFVITTYSIVESEYRKHMMPPKEKCPYCGKSYSHSKLSFHQRYYCGPDAERTEKQSKQLKKKQRKVDTKKNVQMKMGPDNSDTTGKGKSLLHAVKWQRIILDEAHYIKSRQCNTAKAILALESSYRWALSGTPLQNRVGELYSLIRFLQVVPYSYYLCKDCDCRILDHSSKECSNCQHSSVRHFCWWNKYVATPIQLYGNSDAGRRAMILLTHKVLKNIILRRTKIGRAADLALPPRIVSLRKDSLDIKEQDYYESLYNESQAQFNTYVESNTLTNNYAHIFDLLTRLRQAVDHPYLVVYSQAASLKAGVEVSNDNVEQVCGLCHEPVEDPVVTSCEHIFCKACLIDFSASLGQVSCPSCSKLLTVDLTSNIDVGDQSRKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLLKSGVSCVQLNGSMSLTARDAAIKRFTDDPECKIFLMSLKAGGVALNLTVASHVFIMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELIFEGTVGGSAEALGKLTEADMRFLFIT 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0726 892 MobiDBLite consensus disorder prediction 367 403 - -
Prci6g0726 892 ProSitePatterns Zinc finger RING-type signature. 653 662 IPR017907 -
Prci6g0726 892 MobiDBLite consensus disorder prediction 109 135 - -
Prci6g0726 892 SMART helicmild6 753 836 IPR001650 -
Prci6g0726 892 MobiDBLite consensus disorder prediction 1 150 - -
Prci6g0726 892 Pfam SNF2-related domain 214 615 IPR000330 GO:0005524|GO:0140658
Prci6g0726 892 Gene3D - 160 340 IPR038718 -
Prci6g0726 892 Gene3D - 351 554 IPR038718 -
Prci6g0726 892 Coils Coil 366 386 - -
Prci6g0726 892 ProSiteProfiles Zinc finger RING-type profile. 638 678 IPR001841 -
Prci6g0726 892 CDD SF2_C_SNF 720 847 - -
Prci6g0726 892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 890 IPR027417 -
Prci6g0726 892 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 718 882 IPR001650 -
Prci6g0726 892 SMART ring_2 638 677 IPR001841 -
Prci6g0726 892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 540 IPR027417 -
Prci6g0726 892 SMART ultradead3 196 473 IPR014001 -
Prci6g0726 892 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 629 697 IPR013083 -
Prci6g0726 892 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 213 468 IPR014001 -
Prci6g0726 892 Pfam Helicase conserved C-terminal domain 722 836 IPR001650 -
Prci6g0726 892 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 31 890 - -
Prci6g0726 892 SUPERFAMILY RING/U-box 635 682 - -
Prci6g0726 892 MobiDBLite consensus disorder prediction 12 90 - -
Prci6g0726 892 CDD DEXDc_SHPRH-like 200 540 - -
Prci6g0726 892 Gene3D - 555 890 IPR027417 -
Prci6g0726 892 Pfam RING-type zinc-finger 638 675 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0726 Prci-Chr6 4802422 4809270 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0726 135 892 RAD5 or RAD16-like Gene Family AT1G05120 67.397 0.0 1086
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci6g0726 SNF2_N 3.1e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0726 K15083 - gmx:100786366 1264.6