Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0702 ATGTCGGATATTCGGAAATGGTTTATGAAATCCCATAACAAGGGCAATGCTTCGGAGTCGAAGCCTACGAATCAAGTGAAGCCTTCTCCTGCTAAACCACAACCGGAAAAACCAGTGGATGGAGGCCAAGATAGTTCAGGGAAGAGGAAAACTAGCAAATATCTTGCCACTGACAAAAACAAAAAAGACGAAAAAGAGGCACTGGAGCTTCCTGCTAAAAGGAAGATTCCTAAGGACAGTGAGGATTTACAGAAGCCTCTTACAAAAAAAATTCATTTAGATGAAGATGATGACTCTGCCTTGCTCAAATCTAAAAGGAAATCAGTTGATACTACCCCAATAAAAAAATTTAAGGGTGAATCTGGTAGGGAAATTCCACTTAAGTCTACGGATTTGGAAGAAAGTGATGAGGATGGTGTTAAAGCTGATGTATCACCCATTAAATCTGGTGGAAGGGGATGTGGAGGAAGAGGAACATCTGCACAATCATCTAGTGGACGGGGTAGAGGTGGTGGAAGGAGTGGATTTGTGAATTTTGGCGAAAGAAAAGATCCTCCTCACAAAGGAGAAAAGGAAGTCCCTGAGGGTGCTCCTGATTGTTTGACTGGTTTGACTTTTGTCATCAGTGGAACATTGGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGTCGTGTCACTGGATCAGTCAGCAAAAAAACGAATTATCTTCTATGTGATGAAGATATTGGAGGTCGGAAATCTTCAAAAGCAAAAGAGCTGGGTACAAAATTTCTCACTGAGGATGGGTTGTTTGACATGATTCGTGCATCAAATCCTGCAAAGGCTCCTCCACGGGAAGAATCAACAAAAGCGGTGAAAAAGGTTGTTGCAACCCAGTCAAAAAGTCCTCAGAAAGCTGGAATCAAGGGCTTAGCTTCAGCTCCAGTGAAGCCTAAGACAGAAAGTTCTGCACAGTCTTCTTTCATGTGGACAGAGAAGTATCGGCCCAAGGTTCCAAATGACATCATAGGAAATCAGTCCCTTGTTAAGCAGCTTCATGATTGGTTGGCACATTGGAATGAGCAATTTCTTGACAGTGGAAATAAAAAGGGGAAAAAGCAAAATGACACTGGTTCAAAGAAAGCTGTCTTATTAAGTGGAACCCCTGGTATAGGAAAAACCACTTCAGCAAAGGTGGTCTGTAAGATGCTTGGTTTCCAAGCTATAGAGGTTAATGCTAGTGACAGCCGTGGGAAGGCTGATAGCAAAATTGTTAAAGGAATCAGTGGAAGCAATGCAAACTCTATAAAGGAACTTGTCACCAACAAAGCGTTGGGTGCCAAGACAGATGGGGCGAAGCATTCCAAAACTGTGCTCATTATGGATGAGGTTGATGGCATGTCAGCAGGTGATCGGGGTGGCATTGCTGATCTTATTGCTAGTATCAAGATATCAAAAATTCCTATTATCTGTATTTGTAATGACCGCTACAGCCAGAAACTGAAAAGTCTCCTGAACTACTGTCTGCTGCTTAGCTTTCGAAAACCTACAAAGCAACAGATGGCAAAGAGGTTGATGTATGTTGCGAAAGCTGAAGGGCTTCAAGTCAATGAGGTTGCTCTTGAGGAGCTAGCAGAAAGAGTTAATGGAGACATGCGCATGGCACTAAATCAGTTACACTATATGAGCCTCTCCATGTCTGTTATAAACTATGATGACATCAGGCAACGCCTTTTATCTAGTTCAAAGGATGAGGACATTTCACCATTCACTGCTGTTGATAAGCTTTTTGGTTTTGATGCCGGGAAGTTAAAAATGGATGAGAGGATTAATCTTAGCATGAGTGATCCTGACCTTGTTCCTCTTCTTATTCAGGAAAATTATATAAATTATAGACCTAGTTTGGCTAGTAAAGATGACAATGATATGAAGCGCATGAAGTTAATTGCCCGTGCTGCTGAGTCTATTGCTGATGGAGATATAGTGAATGTACAGATTCGAAGATATCGGCAGTGGCAGCTGTCTCAAGCTAGTGCTCTTGCATCGAGTATAATTCCTTCTTCATTGTTGCATGGGCAAAGAGAAATACTTGAACAGGGAGAACGGAATTATAATCGGTTTGGTGGGTGGCTGGGGAAAAACTCAACAATGGGCAAAAACTTTAGGCTTTTGGAAGATCTGCATGTTCATATTCTTGCTTCTCGTGAATCCTGTCCAGGAAGGGAAACCCTCCGCTTGGAATATCTTAAGCCACTTCTTCAACAGTTGACGGAGCCGCTAAGAGTCTTGCCTAAGGATGAAGCTGTTCAGAAAGTTGTGGAATTTATGAACATGTACTCAGTCAGTCAAGAGGATTTTGATACTATTGTCGAACTATCAAAATTCAAGGGTCATCCAAATCCACTAGATGGCATACCGCCTGCTGTTAAATCTGCATTGACAAAAGCATACAAAGAGGAAAGCAAGTCTCGGATGGTTCGAGCTGCAGATCTAGTCAATATTCCTGGAATGAAAAAGCCTGTTAAGAAGCGAGTTGCGGCTATCCTAGAACCATCTGACGAAGGATCAAAACAGGGTGAAGGTGATACCCTGGAAGAGAGTGAAGAAGAAAATTCCTCAGACACAGAGGAGTTAGAAGGTACCACCACTGGTGAGAAGCTGCGGTCAGATCTTCAAAGTTTAAATTCAAAGGGCATGCAAGTACAATTAGATTTGAAGGGAACAGGAAATTTAAGTGGCAGGAAGACACCAGCTGGAAGAGGTAAAGGTGCTTCTGCATCGGCAGAGAAGGGTGGTCGAGGTGGGGCGAAAAGGAAGAGGTGA 2820 0.4262 MSDIRKWFMKSHNKGNASESKPTNQVKPSPAKPQPEKPVDGGQDSSGKRKTSKYLATDKNKKDEKEALELPAKRKIPKDSEDLQKPLTKKIHLDEDDDSALLKSKRKSVDTTPIKKFKGESGREIPLKSTDLEESDEDGVKADVSPIKSGGRGCGGRGTSAQSSSGRGRGGGRSGFVNFGERKDPPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTKFLTEDGLFDMIRASNPAKAPPREESTKAVKKVVATQSKSPQKAGIKGLASAPVKPKTESSAQSSFMWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNEQFLDSGNKKGKKQNDTGSKKAVLLSGTPGIGKTTSAKVVCKMLGFQAIEVNASDSRGKADSKIVKGISGSNANSIKELVTNKALGAKTDGAKHSKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLLNYCLLLSFRKPTKQQMAKRLMYVAKAEGLQVNEVALEELAERVNGDMRMALNQLHYMSLSMSVINYDDIRQRLLSSSKDEDISPFTAVDKLFGFDAGKLKMDERINLSMSDPDLVPLLIQENYINYRPSLASKDDNDMKRMKLIARAAESIADGDIVNVQIRRYRQWQLSQASALASSIIPSSLLHGQREILEQGERNYNRFGGWLGKNSTMGKNFRLLEDLHVHILASRESCPGRETLRLEYLKPLLQQLTEPLRVLPKDEAVQKVVEFMNMYSVSQEDFDTIVELSKFKGHPNPLDGIPPAVKSALTKAYKEESKSRMVRAADLVNIPGMKKPVKKRVAAILEPSDEGSKQGEGDTLEESEEENSSDTEELEGTTTGEKLRSDLQSLNSKGMQVQLDLKGTGNLSGRKTPAGRGKGASASAEKGGRGGAKRKR 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0702 939 CDD BRCT_RFC1 196 274 - -
Prci6g0702 939 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 575 IPR027417 -
Prci6g0702 939 FunFam Replication factor C subunit 1 587 696 - -
Prci6g0702 939 ProSiteProfiles BRCT domain profile. 196 274 IPR001357 -
Prci6g0702 939 MobiDBLite consensus disorder prediction 847 939 - -
Prci6g0702 939 FunFam Replication factor C subunit 1 327 514 - -
Prci6g0702 939 CDD AAA 375 478 - -
Prci6g0702 939 MobiDBLite consensus disorder prediction 847 861 - -
Prci6g0702 939 Gene3D - 587 696 - -
Prci6g0702 939 Pfam ATPase family associated with various cellular activities (AAA) 382 477 IPR003959 GO:0005524|GO:0016887
Prci6g0702 939 MobiDBLite consensus disorder prediction 884 908 - -
Prci6g0702 939 Pfam Replication factor RFC1 C terminal domain 655 817 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Prci6g0702 939 MobiDBLite consensus disorder prediction 1 200 - -
Prci6g0702 939 FunFam Replication factor C subunit 1 515 586 - -
Prci6g0702 939 MobiDBLite consensus disorder prediction 13 27 - -
Prci6g0702 939 SUPERFAMILY post-AAA+ oligomerization domain-like 586 731 IPR008921 GO:0003677|GO:0006260
Prci6g0702 939 MobiDBLite consensus disorder prediction 180 195 - -
Prci6g0702 939 Gene3D BRCT domain 173 275 IPR036420 -
Prci6g0702 939 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 14 917 - -
Prci6g0702 939 PIRSF RFC1 9 916 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Prci6g0702 939 Gene3D - 327 514 IPR027417 -
Prci6g0702 939 CDD HLD_clamp_RFC 515 573 - -
Prci6g0702 939 Gene3D - 515 585 - -
Prci6g0702 939 SMART BRCT_7 198 276 IPR001357 -
Prci6g0702 939 MobiDBLite consensus disorder prediction 297 323 - -
Prci6g0702 939 SMART AAA_5 378 516 IPR003593 GO:0016887
Prci6g0702 939 MobiDBLite consensus disorder prediction 42 143 - -
Prci6g0702 939 SUPERFAMILY BRCT domain 196 275 IPR036420 -
Prci6g0702 939 FunFam Replication factor C subunit 1 172 275 - -
Prci6g0702 939 Pfam BRCA1 C Terminus (BRCT) domain 198 273 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0702 Prci-Chr6 4621110 4628767 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0702 1 897 Core DNA Replication Machinery Family AT5G22010 67.869 0.0 1130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0702 K10754 - gmx:100790070 1307.74