Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0701 ATGTCGGATATTCGGAAATGGTTTATGAAATCCCATAACAAGGGCAATGCTTCGGAGTCGAAGCCTACGAATCAAGTGAAGCCTTCTCCTGCTAAACCACAACCGGAAAAACCAATCTCTTCGCAGGTGGATGGAGGCCAAGATAGTTCAGGGAAGAGGAAAACTAGCAAATATCTTGCCACTGACAAAAACAAAAAAGACGAAAAAGAGGCACTGGAGCTTCCTGCTAAAAGGAAGATTCCTAAGGACAGTGAGGATTTACAGAAGCCTCTTACAAAAAAAATTCATTTAGATGAAGATGATGACTCTGCCTTGCTCAAATCTAAAAGGAAATCAGTTGATACTACCCCAATAAAAAAATTTAAGGGTGAATCTGGTAGGGAAATTCCACTTAAGTCTACGGATTTGGAAGAAAGTGATGAGGATGGTGTTAAAGCTGATGTATCACCCATTAAATCTGGTGGAAGGGGATGTGGAGGAAGAGGAACATCTGCACAATCATCTAGTGGACGGGGTAGAGGTGGTGGAAGGAGTGGATTTGTGAATTTTGGCGAAAGAAAAGATCCTCCTCACAAAGGAGAAAAGGAAGTCCCTGAGGGTGCTCCTGATTGTTTGACTGGTTTGACTTTTGTCATCAGTGGAACATTGGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGTCGTGTCACTGGATCAGTCAGCAAAAAAACGAATTATCTTCTATGTGATGAAGATATTGGAGGTCGGAAATCTTCAAAAGCAAAAGAGCTGGGTACAAAATTTCTCACTGAGGATGGGTTGTTTGACATGATTCGTGCATCAAATCCTGCAAAGGCTCCTCCACGGGAAGAATCAACAAAAGCGGTGAAAAAGGTTGTTGCAACCCAGTCAAAAAGTCCTCAGAAAGCTGGAATCAAGGGCTTAGCTTCAGCTCCAGTGAAGCCTAAGACAGAAAGTTCTGCACAGTCTTCTTTCATGTGGACAGAGAAGTATCGGCCCAAGGTTCCAAATGACATCATAGGAAATCAGTCCCTTGTTAAGCAGCTTCATGATTGGTTGGCACATTGGAATGAGCAATTTCTTGACAGTGGAAATAAAAAGGGGAAAAAGCAAAATGACACTGGTTCAAAGAAAGCTGTCTTATTAAGTGGAACCCCTGGTATAGGAAAAACCACTTCAGCAAAGGTGGTCTGTAAGATGCTTGGTTTCCAAGCTATAGAGGTTAATGCTAGTGACAGCCGTGGGAAGGCTGATAGCAAAATTGTTAAAGGAATCAGTGGAAGCAATGCAAACTCTATAAAGGAACTTGTCACCAACAAAGCGTTGGGTGCCAAGACAGATGGGGCGAAGCATTCCAAAACTGTGCTCATTATGGATGAGGTTGATGGCATGTCAGCAGGTGATCGGGGTGGCATTGCTGATCTTATTGCTAGTATCAAGATATCAAAAATTCCTATTATCTGTATTTGTAATGACCGCTACAGCCAGAAACTGAAAAGTCTCCTGAACTACTGTCTGCTGCTTAGCTTTCGAAAACCTACAAAGCAACAGATGGCAAAGAGGTTGATGTATGTTGCGAAAGCTGAAGGGCTTCAAGTCAATGAGGTTGCTCTTGAGGAGCTAGCAGAAAGAGTTAATGGAGACATGCGCATGGCACTAAATCAGTTACACTATATGAGCCTCTCCATGTCTGTTATAAACTATGATGACATCAGGCAACGCCTTTTATCTAGTTCAAAGGATGAGGACATTTCACCATTCACTGCTGTTGATAAGCTTTTTGGTTTTGATGCCGGGAAGTTAAAAATGGATGAGAGGATTAATCTTAGCATGAGTGATCCTGACCTTGTTCCTCTTCTTATTCAGGAAAATTATATAAATTATAGACCTAGTTTGGCTAGTAAAGATGACAATGATATGAAGCGCATGAAGTTAATTGCCCGTGCTGCTGAGTCTATTGCTGATGGAGATATAGTGAATGTACAGATTCGAAGATATCGGCAGTGGCAGCTGTCTCAAGCTAGTGCTCTTGCATCGAGTATAATTCCTTCTTCATTGTTGCATGGGCAAAGAGAAATACTTGAACAGGGAGAACGGAATTATAATCGGTTTGGTGGGTGGCTGGGGAAAAACTCAACAATGGGCAAAAACTTTAGGCTTTTGGAAGATCTGCATGTTCATATTCTTGCTTCTCGTGAATCCTGTCCAGGAAGGGAAACCCTCCGCTTGGAATATCTTAAGCCACTTCTTCAACAGTTGACGGAGCCGCTAAGAGTCTTGCCTAAGGATGAAGCTGTTCAGAAAGTTGTGGAATTTATGAACATGTACTCAGTCAGTCAAGAGGATTTTGATACTATTGTCGAACTATCAAAATTCAAGGGTCATCCAAATCCACTAGATGGCATACCGCCTGCTGTTAAATCTGCATTGACAAAAGCATACAAAGAGGAAAGCAAGTCTCGGATGGTTCGAGCTGCAGATCTAGTCAATATTCCTGGAATGAAAAAGCCTGTTAAGAAGCGAGTTGCGGCTATCCTAGAACCATCTGACGAAGGATCAAAACAGGGTGAAGGTGATACCCTGGAAGAGAGTGAAGAAGAAAATTCCTCAGACACAGAGGAGTTAGAAGGTACCACCACTGGTGAGAAGCTGCGGTCAGATCTTCAAAGTTTAAATTCAAAGGGCATGCAAGTACAATTAGATTTGAAGGGAACAGGAAATTTAAGTGGCAGGAAGACACCAGCTGGAAGAGGTAAAGGTGCTTCTGCATCGGCAGAGAAGGGTGGTCGAGGTGGGGCGAAAAGGAAGAGGTGA 2832 0.4266 MSDIRKWFMKSHNKGNASESKPTNQVKPSPAKPQPEKPISSQVDGGQDSSGKRKTSKYLATDKNKKDEKEALELPAKRKIPKDSEDLQKPLTKKIHLDEDDDSALLKSKRKSVDTTPIKKFKGESGREIPLKSTDLEESDEDGVKADVSPIKSGGRGCGGRGTSAQSSSGRGRGGGRSGFVNFGERKDPPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTKFLTEDGLFDMIRASNPAKAPPREESTKAVKKVVATQSKSPQKAGIKGLASAPVKPKTESSAQSSFMWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNEQFLDSGNKKGKKQNDTGSKKAVLLSGTPGIGKTTSAKVVCKMLGFQAIEVNASDSRGKADSKIVKGISGSNANSIKELVTNKALGAKTDGAKHSKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLLNYCLLLSFRKPTKQQMAKRLMYVAKAEGLQVNEVALEELAERVNGDMRMALNQLHYMSLSMSVINYDDIRQRLLSSSKDEDISPFTAVDKLFGFDAGKLKMDERINLSMSDPDLVPLLIQENYINYRPSLASKDDNDMKRMKLIARAAESIADGDIVNVQIRRYRQWQLSQASALASSIIPSSLLHGQREILEQGERNYNRFGGWLGKNSTMGKNFRLLEDLHVHILASRESCPGRETLRLEYLKPLLQQLTEPLRVLPKDEAVQKVVEFMNMYSVSQEDFDTIVELSKFKGHPNPLDGIPPAVKSALTKAYKEESKSRMVRAADLVNIPGMKKPVKKRVAAILEPSDEGSKQGEGDTLEESEEENSSDTEELEGTTTGEKLRSDLQSLNSKGMQVQLDLKGTGNLSGRKTPAGRGKGASASAEKGGRGGAKRKR 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0701 943 SMART AAA_5 382 520 IPR003593 GO:0016887
Prci6g0701 943 MobiDBLite consensus disorder prediction 184 199 - -
Prci6g0701 943 Pfam ATPase family associated with various cellular activities (AAA) 386 481 IPR003959 GO:0005524|GO:0016887
Prci6g0701 943 CDD HLD_clamp_RFC 519 577 - -
Prci6g0701 943 Pfam Replication factor RFC1 C terminal domain 659 821 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Prci6g0701 943 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 13 921 - -
Prci6g0701 943 MobiDBLite consensus disorder prediction 301 327 - -
Prci6g0701 943 Gene3D BRCT domain 177 279 IPR036420 -
Prci6g0701 943 MobiDBLite consensus disorder prediction 40 54 - -
Prci6g0701 943 FunFam Replication factor C subunit 1 331 518 - -
Prci6g0701 943 CDD BRCT_RFC1 200 278 - -
Prci6g0701 943 MobiDBLite consensus disorder prediction 13 27 - -
Prci6g0701 943 FunFam Replication factor C subunit 1 176 279 - -
Prci6g0701 943 SUPERFAMILY post-AAA+ oligomerization domain-like 590 735 IPR008921 GO:0003677|GO:0006260
Prci6g0701 943 SMART BRCT_7 202 280 IPR001357 -
Prci6g0701 943 Gene3D - 519 589 - -
Prci6g0701 943 Gene3D - 591 700 - -
Prci6g0701 943 Gene3D - 331 518 IPR027417 -
Prci6g0701 943 MobiDBLite consensus disorder prediction 1 204 - -
Prci6g0701 943 FunFam Replication factor C subunit 1 519 590 - -
Prci6g0701 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 331 579 IPR027417 -
Prci6g0701 943 PIRSF RFC1 10 920 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Prci6g0701 943 MobiDBLite consensus disorder prediction 851 943 - -
Prci6g0701 943 FunFam Replication factor C subunit 1 591 700 - -
Prci6g0701 943 ProSiteProfiles BRCT domain profile. 200 278 IPR001357 -
Prci6g0701 943 Pfam BRCA1 C Terminus (BRCT) domain 202 277 IPR001357 -
Prci6g0701 943 SUPERFAMILY BRCT domain 200 279 IPR036420 -
Prci6g0701 943 CDD AAA 379 482 - -
Prci6g0701 943 MobiDBLite consensus disorder prediction 851 865 - -
Prci6g0701 943 MobiDBLite consensus disorder prediction 888 912 - -
Prci6g0701 943 MobiDBLite consensus disorder prediction 55 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0701 Prci-Chr6 4621110 4628767 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0701 1 901 Core DNA Replication Machinery Family AT5G22010 68.087 0.0 1133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0701 K10754 - gmx:100790070 1302.35