Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0700 ATGTCGGATATTCGGAAATGGTTTATGAAATCCCATAACAAGGGCAATGCTTCGGAGTCGAAGCCTACGAATCAAGTGAAGCCTTCTCCTGCTAAACCACAACCGGAAAAACCAGTGAGCCTCGTTGCCCCTTTTTTGGTGGATGGAGGCCAAGATAGTTCAGGGAAGAGGAAAACTAGCAAATATCTTGCCACTGACAAAAACAAAAAAGACGAAAAAGAGGCACTGGAGCTTCCTGCTAAAAGGAAGATTCCTAAGGACAGTGAGGATTTACAGAAGCCTCTTACAAAAAAAATTCATTTAGATGAAGATGATGACTCTGCCTTGCTCAAATCTAAAAGGAAATCAGTTGATACTACCCCAATAAAAAAATTTAAGGGTGAATCTGGTAGGGAAATTCCACTTAAGTCTACGGATTTGGAAGAAAGTGATGAGGATGGTGTTAAAGCTGATGTATCACCCATTAAATCTGGTGGAAGGGGATGTGGAGGAAGAGGAACATCTGCACAATCATCTAGTGGACGGGGTAGAGGTGGTGGAAGGAGTGGATTTGTGAATTTTGGCGAAAGAAAAGATCCTCCTCACAAAGGAGAAAAGGAAGTCCCTGAGGGTGCTCCTGATTGTTTGACTGGTTTGACTTTTGTCATCAGTGGAACATTGGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGTCGTGTCACTGGATCAGTCAGCAAAAAAACGAATTATCTTCTATGTGATGAAGATATTGGAGGTCGGAAATCTTCAAAAGCAAAAGAGCTGGGTACAAAATTTCTCACTGAGGATGGGTTGTTTGACATGATTCGTGCATCAAATCCTGCAAAGGCTCCTCCACGGGAAGAATCAACAAAAGCGGTGAAAAAGGTTGTTGCAACCCAGTCAAAAAGTCCTCAGAAAGCTGGAATCAAGGGCTTAGCTTCAGCTCCAGTGAAGCCTAAGACAGAAAGTTCTGCACAGTCTTCTTTCATGTGGACAGAGAAGTATCGGCCCAAGGTTCCAAATGACATCATAGGAAATCAGTCCCTTGTTAAGCAGCTTCATGATTGGTTGGCACATTGGAATGAGCAATTTCTTGACAGTGGAAATAAAAAGGGGAAAAAGCAAAATGACACTGGTTCAAAGAAAGCTGTCTTATTAAGTGGAACCCCTGGTATAGGAAAAACCACTTCAGCAAAGGTGGTCTGTAAGATGCTTGGTTTCCAAGCTATAGAGGTTAATGCTAGTGACAGCCGTGGGAAGGCTGATAGCAAAATTGTTAAAGGAATCAGTGGAAGCAATGCAAACTCTATAAAGGAACTTGTCACCAACAAAGCGTTGGGTGCCAAGACAGATGGGGCGAAGCATTCCAAAACTGTGCTCATTATGGATGAGGTTGATGGCATGTCAGCAGGTGATCGGGGTGGCATTGCTGATCTTATTGCTAGTATCAAGATATCAAAAATTCCTATTATCTGTATTTGTAATGACCGCTACAGCCAGAAACTGAAAAGTCTCCTGAACTACTGTCTGCTGCTTAGCTTTCGAAAACCTACAAAGCAACAGATGGCAAAGAGGTTGATGTATGTTGCGAAAGCTGAAGGGCTTCAAGTCAATGAGGTTGCTCTTGAGGAGCTAGCAGAAAGAGTTAATGGAGACATGCGCATGGCACTAAATCAGTTACACTATATGAGCCTCTCCATGTCTGTTATAAACTATGATGACATCAGGCAACGCCTTTTATCTAGTTCAAAGGATGAGGACATTTCACCATTCACTGCTGTTGATAAGCTTTTTGGTTTTGATGCCGGGAAGTTAAAAATGGATGAGAGGATTAATCTTAGCATGAGTGATCCTGACCTTGTTCCTCTTCTTATTCAGGAAAATTATATAAATTATAGACCTAGTTTGGCTAGTAAAGATGACAATGATATGAAGCGCATGAAGTTAATTGCCCGTGCTGCTGAGTCTATTGCTGATGGAGATATAGTGAATGTACAGATTCGAAGATATCGGCAGTGGCAGCTGTCTCAAGCTAGTGCTCTTGCATCGAGTATAATTCCTTCTTCATTGTTGCATGGGCAAAGAGAAATACTTGAACAGGGAGAACGGAATTATAATCGGTTTGGTGGGTGGCTGGGGAAAAACTCAACAATGGGCAAAAACTTTAGGCTTTTGGAAGATCTGCATGTTCATATTCTTGCTTCTCGTGAATCCTGTCCAGGAAGGGAAACCCTCCGCTTGGAATATCTTAAGCCACTTCTTCAACAGTTGACGGAGCCGCTAAGAGTCTTGCCTAAGGATGAAGCTGTTCAGAAAGTTGTGGAATTTATGAACATGTACTCAGTCAGTCAAGAGGATTTTGATACTATTGTCGAACTATCAAAATTCAAGGGTCATCCAAATCCACTAGATGGCATACCGCCTGCTGTTAAATCTGCATTGACAAAAGCATACAAAGAGGAAAGCAAGTCTCGGATGGTTCGAGCTGCAGATCTAGTCAATATTCCTGGAATGAAAAAGCCTGTTAAGAAGCGAGTTGCGGCTATCCTAGAACCATCTGACGAAGGATCAAAACAGGGTGAAGGTGATACCCTGGAAGAGAGTGAAGAAGAAAATTCCTCAGACACAGAGGAGTTAGAAGGTACCACCACTGGTGAGAAGCTGCGGTCAGATCTTCAAAGTTTAAATTCAAAGGGCATGCAAGTACAATTAGATTTGAAGGGAACAGGAAATTTAAGTGGCAGGAAGACACCAGCTGGAAGAGGTAAAGGTGCTTCTGCATCGGCAGAGAAGGGTGGTCGAGGTGGGGCGAAAAGGAAGAGGTGA 2844 0.4272 MSDIRKWFMKSHNKGNASESKPTNQVKPSPAKPQPEKPVSLVAPFLVDGGQDSSGKRKTSKYLATDKNKKDEKEALELPAKRKIPKDSEDLQKPLTKKIHLDEDDDSALLKSKRKSVDTTPIKKFKGESGREIPLKSTDLEESDEDGVKADVSPIKSGGRGCGGRGTSAQSSSGRGRGGGRSGFVNFGERKDPPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTKFLTEDGLFDMIRASNPAKAPPREESTKAVKKVVATQSKSPQKAGIKGLASAPVKPKTESSAQSSFMWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNEQFLDSGNKKGKKQNDTGSKKAVLLSGTPGIGKTTSAKVVCKMLGFQAIEVNASDSRGKADSKIVKGISGSNANSIKELVTNKALGAKTDGAKHSKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLLNYCLLLSFRKPTKQQMAKRLMYVAKAEGLQVNEVALEELAERVNGDMRMALNQLHYMSLSMSVINYDDIRQRLLSSSKDEDISPFTAVDKLFGFDAGKLKMDERINLSMSDPDLVPLLIQENYINYRPSLASKDDNDMKRMKLIARAAESIADGDIVNVQIRRYRQWQLSQASALASSIIPSSLLHGQREILEQGERNYNRFGGWLGKNSTMGKNFRLLEDLHVHILASRESCPGRETLRLEYLKPLLQQLTEPLRVLPKDEAVQKVVEFMNMYSVSQEDFDTIVELSKFKGHPNPLDGIPPAVKSALTKAYKEESKSRMVRAADLVNIPGMKKPVKKRVAAILEPSDEGSKQGEGDTLEESEEENSSDTEELEGTTTGEKLRSDLQSLNSKGMQVQLDLKGTGNLSGRKTPAGRGKGASASAEKGGRGGAKRKR 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0700 947 ProSiteProfiles BRCT domain profile. 204 282 IPR001357 -
Prci6g0700 947 CDD BRCT_RFC1 204 282 - -
Prci6g0700 947 PIRSF RFC1 9 924 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Prci6g0700 947 Gene3D BRCT domain 181 283 IPR036420 -
Prci6g0700 947 Pfam Replication factor RFC1 C terminal domain 663 825 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Prci6g0700 947 SMART AAA_5 386 524 IPR003593 GO:0016887
Prci6g0700 947 MobiDBLite consensus disorder prediction 855 947 - -
Prci6g0700 947 Gene3D - 595 704 - -
Prci6g0700 947 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 583 IPR027417 -
Prci6g0700 947 CDD AAA 383 486 - -
Prci6g0700 947 MobiDBLite consensus disorder prediction 855 869 - -
Prci6g0700 947 Pfam ATPase family associated with various cellular activities (AAA) 390 485 IPR003959 GO:0005524|GO:0016887
Prci6g0700 947 FunFam Replication factor C subunit 1 595 704 - -
Prci6g0700 947 MobiDBLite consensus disorder prediction 59 151 - -
Prci6g0700 947 MobiDBLite consensus disorder prediction 892 916 - -
Prci6g0700 947 MobiDBLite consensus disorder prediction 13 27 - -
Prci6g0700 947 SUPERFAMILY post-AAA+ oligomerization domain-like 594 739 IPR008921 GO:0003677|GO:0006260
Prci6g0700 947 MobiDBLite consensus disorder prediction 188 203 - -
Prci6g0700 947 FunFam Replication factor C subunit 1 335 522 - -
Prci6g0700 947 SUPERFAMILY BRCT domain 204 283 IPR036420 -
Prci6g0700 947 FunFam Replication factor C subunit 1 180 283 - -
Prci6g0700 947 FunFam Replication factor C subunit 1 523 594 - -
Prci6g0700 947 CDD HLD_clamp_RFC 523 581 - -
Prci6g0700 947 SMART BRCT_7 206 284 IPR001357 -
Prci6g0700 947 Gene3D - 335 522 IPR027417 -
Prci6g0700 947 MobiDBLite consensus disorder prediction 305 331 - -
Prci6g0700 947 Pfam BRCA1 C Terminus (BRCT) domain 206 281 IPR001357 -
Prci6g0700 947 MobiDBLite consensus disorder prediction 1 208 - -
Prci6g0700 947 Gene3D - 523 593 - -
Prci6g0700 947 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 13 925 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0700 Prci-Chr6 4621110 4628767 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0700 1 905 Core DNA Replication Machinery Family AT5G22010 67.391 0.0 1130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0700 K10754 - gmx:100790070 1301.58