Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0699 ATGTCGGATATTCGGAAATGGTTTATGAAATCCCATAACAAGGGCAATGCTTCGGAGTCGAAGCCTACGAATCAAGTGAAGCCTTCTCCTGCTAAACCACAACCGGAAAAACCAGTGAGCCTCGTTGCCCCTTTTTTGGTGGATGGAGGCCAAGATAGTTCAGGGAAGAGGAAAACTAGCAAATATCTTGCCACTGACAAAAACAAAAAAGACGAAAAAGAGGCACTGGAGCTTCCTGCTAAAAGGAAGATTCCTAAGGACAGTGAGGATTTACAGAAGCCTCTTACAAAAAAAATTCATTTAGATGAAGATGATGACTCTGCCTTGCTCAAATCTAAAAGGAAATCAGTTGATACTACCCCAATAAAAAAATTTAAGGGTGAATCTGGTAGGGAAATTCCACTTAAGTCTACGGATTTGGAAGAAAGTGATGAGGATGGTGTTAAAGCTGATGTATCACCCATTAAATCTGGTGGAAGGGGATGTGGAGGAAGAGGAACATCTGCACAATCATCTAGTGGACGGGGTAGAGGTGGTGGAAGGAGTGGATTTGTGAATTTTGGCGAAAGAAAAGATCCTCCTCACAAAGGAGAAAAGGAAGTCCCTGAGGGTGCTCCTGATTGTTTGACTGGTTTGACTTTTGTCATCAGTGGAACATTGGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGTCGTGTCACTGGATCAGTCAGCAAAAAAACGAATTATCTTCTATGTGATGAAGATATTGGAGGTCGGAAATCTTCAAAAGCAAAAGAGCTGGGTACAAAATTTCTCACTGAGGATGGGTTGTTTGACATGATTCGTGCATCAAATCCTGCAAAGGCTCCTCCACGGGAAGAATCAACAAAAGCGGTGAAAAAGGTTGTTGCAACCCAGTCAAAAAGTCCTCAGAAAGCTGGAATCAAGGGCTTAGCTTCAGCTCCAGTGAAGCCTAAGACAGAAAGTTCTGCACAGTCTTCTTTCATGTGGACAGAGAAGTATCGGCCCAAGGTTCCAAATGACATCATAGGAAATCAGTCCCTTGTTAAGCAGCTTCATGATTGGTTGGCACATTGGAATGAGCAATTTCTTGACAGTGGAAATAAAAAGGGGAAAAAGCAAAATGACACTGGTTCAAAGAAAGCTGTCTTATTAAGTGGAACCCCTGGTATAGGAAAAACCACTTCAGCAAAGGTGGTCTGTAAGATGCTTGGTTTCCAAGCTATAGAGGTTAATGCTAGTGACAGCCGTGGGAAGGCTGATAGCAAAATTGTTAAAGGAATCAGTGGAAGCAATGCAAACTCTATAAAGGAACTTGTCACCAACAAAGCGTTGGGTGCCAAGACAGATGGGGCGAAGCATTCCAAAACTGTGCTCATTATGGATGAGGTTGATGGCATGTCAGCAGGTGATCGGGGTGGCATTGCTGATCTTATTGCTAGTATCAAGATATCAAAAATTCCTATTATCTGTATTTGTAATGACCGCTACAGCCAGAAACTGAAAAGTCTCCTGAACTACTGTCTGCTGCTTAGCTTTCGAAAACCTACAAAGCAACAGATGGCAAAGAGGTTGATGTATGTTGCGAAAGCTGAAGGGCTTCAAGTCAATGAGGTTGCTCTTGAGGAGCTAGCAGAAAGAGTTAATGGAGACATGCGCATGGCACTAAATCAGTTACACTATATGAGCCTCTCCATGTCTGTTATAAACTATGATGACATCAGGCAACGCCTTTTATCTAGTTCAAAGGATGAGGACATTTCACCATTCACTGCTGTTGATAAGCTTTTTGGTTTTGATGCCGGGAAGTTAAAAATGGATGAGAGGATTAATCTTAGCATGAGTGATCCTGACCTTGTTCCTCTTCTTATTCAGATTCGAAGATATCGGCAGTGGCAGCTGTCTCAAGCTAGTGCTCTTGCATCGAGTATAATTCCTTCTTCATTGTTGCATGGGCAAAGAGAAATACTTGAACAGGGAGAACGGAATTATAATCGGTTTGGTGGGTGGCTGGGGAAAAACTCAACAATGGGCAAAAACTTTAGGCTTTTGGAAGATCTGCATGTTCATATTCTTGCTTCTCGTGAATCCTGTCCAGGAAGGGAAACCCTCCGCTTGGAATATCTTAAGCCACTTCTTCAACAGTTGACGGAGCCGCTAAGAGTCTTGCCTAAGGATGAAGCTGTTCAGAAAGTTGTGGAATTTATGAACATGTACTCAGTCAGTCAAGAGGATTTTGATACTATTGTCGAACTATCAAAATTCAAGGGTCATCCAAATCCACTAGATGGCATACCGCCTGCTGTTAAATCTGCATTGACAAAAGCATACAAAGAGGAAAGCAAGTCTCGGATGGTTCGAGCTGCAGATCTAGTCAATATTCCTGGAATGAAAAAGCCTGTTAAGAAGCGAGTTGCGGCTATCCTAGAACCATCTGACGAAGGATCAAAACAGGGTGAAGGTGATACCCTGGAAGAGAGTGAAGAAGAAAATTCCTCAGACACAGAGGAGTTAGAAGGTACCACCACTGGTGAGAAGCTGCGGTCAGATCTTCAAAGTTTAAATTCAAAGGGCATGCAAGTACAATTAGATTTGAAGGGAACAGGAAATTTAAGTGGCAGGAAGACACCAGCTGGAAGAGGTAAAGGTGCTTCTGCATCGGCAGAGAAGGGTGGTCGAGGTGGGGCGAAAAGGAAGAGGTGA 2724 0.4302 MSDIRKWFMKSHNKGNASESKPTNQVKPSPAKPQPEKPVSLVAPFLVDGGQDSSGKRKTSKYLATDKNKKDEKEALELPAKRKIPKDSEDLQKPLTKKIHLDEDDDSALLKSKRKSVDTTPIKKFKGESGREIPLKSTDLEESDEDGVKADVSPIKSGGRGCGGRGTSAQSSSGRGRGGGRSGFVNFGERKDPPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTKFLTEDGLFDMIRASNPAKAPPREESTKAVKKVVATQSKSPQKAGIKGLASAPVKPKTESSAQSSFMWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNEQFLDSGNKKGKKQNDTGSKKAVLLSGTPGIGKTTSAKVVCKMLGFQAIEVNASDSRGKADSKIVKGISGSNANSIKELVTNKALGAKTDGAKHSKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLLNYCLLLSFRKPTKQQMAKRLMYVAKAEGLQVNEVALEELAERVNGDMRMALNQLHYMSLSMSVINYDDIRQRLLSSSKDEDISPFTAVDKLFGFDAGKLKMDERINLSMSDPDLVPLLIQIRRYRQWQLSQASALASSIIPSSLLHGQREILEQGERNYNRFGGWLGKNSTMGKNFRLLEDLHVHILASRESCPGRETLRLEYLKPLLQQLTEPLRVLPKDEAVQKVVEFMNMYSVSQEDFDTIVELSKFKGHPNPLDGIPPAVKSALTKAYKEESKSRMVRAADLVNIPGMKKPVKKRVAAILEPSDEGSKQGEGDTLEESEEENSSDTEELEGTTTGEKLRSDLQSLNSKGMQVQLDLKGTGNLSGRKTPAGRGKGASASAEKGGRGGAKRKR 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0699 907 PIRSF RFC1 9 633 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Prci6g0699 907 PIRSF RFC1 631 884 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Prci6g0699 907 ProSiteProfiles BRCT domain profile. 204 282 IPR001357 -
Prci6g0699 907 Pfam BRCA1 C Terminus (BRCT) domain 206 281 IPR001357 -
Prci6g0699 907 CDD BRCT_RFC1 204 282 - -
Prci6g0699 907 FunFam Replication factor C subunit 1 335 522 - -
Prci6g0699 907 SUPERFAMILY BRCT domain 204 283 IPR036420 -
Prci6g0699 907 Gene3D - 335 522 IPR027417 -
Prci6g0699 907 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 583 IPR027417 -
Prci6g0699 907 SMART AAA_5 386 524 IPR003593 GO:0016887
Prci6g0699 907 Pfam ATPase family associated with various cellular activities (AAA) 390 485 IPR003959 GO:0005524|GO:0016887
Prci6g0699 907 MobiDBLite consensus disorder prediction 815 829 - -
Prci6g0699 907 CDD AAA 383 486 - -
Prci6g0699 907 MobiDBLite consensus disorder prediction 815 907 - -
Prci6g0699 907 MobiDBLite consensus disorder prediction 59 151 - -
Prci6g0699 907 MobiDBLite consensus disorder prediction 852 876 - -
Prci6g0699 907 MobiDBLite consensus disorder prediction 13 27 - -
Prci6g0699 907 FunFam Replication factor C subunit 1 523 594 - -
Prci6g0699 907 Gene3D BRCT domain 181 283 IPR036420 -
Prci6g0699 907 MobiDBLite consensus disorder prediction 188 203 - -
Prci6g0699 907 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 13 885 - -
Prci6g0699 907 CDD HLD_clamp_RFC 523 581 - -
Prci6g0699 907 SMART BRCT_7 206 284 IPR001357 -
Prci6g0699 907 Gene3D - 523 593 - -
Prci6g0699 907 Pfam Replication factor RFC1 C terminal domain 632 785 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Prci6g0699 907 MobiDBLite consensus disorder prediction 305 331 - -
Prci6g0699 907 SUPERFAMILY post-AAA+ oligomerization domain-like 594 699 IPR008921 GO:0003677|GO:0006260
Prci6g0699 907 MobiDBLite consensus disorder prediction 1 208 - -
Prci6g0699 907 FunFam Replication factor C subunit 1 180 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0699 Prci-Chr6 4621108 4628767 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0699 1 865 Core DNA Replication Machinery Family AT5G22010 64.520 0.0 1058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0699 K10754 - gmx:100790070 1215.29