Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0672 ATGGATGAAATCGAAGTTCCTCAGTATTTCGTCTGTCCCATTTCACTTCAGATCATGAAGGACCCTGTGACTACGCTCACCGGCATAACCTACGACAGAGAAAGCATCGAACAGTGGCTGCTCAAGGCCAAAGACCACAAGTGTCCTGTCACGAAGCAGCCATTGCCCAGAGGCTCCGACCTCACTCCCAACCACACCCTCCGCCGTCTCATCCAGGCTTGGTGCTCGGAAAACGCCGCTCACGGCGTCGATCGCATCCCCACCCCTAAATCCCCTCCCAACAAGACGCTCCTCCAGAAACTGGTCAGGAATCTCCAGCTTCCCCAGTTGTGCCAATCCGCATTGGAGAGATTGCATGCTCTGGCCACAGAAAACCAGAGGAACCTGAAGTGCATGGTGGAATCTGGCGTGGCCGAGTCCATGGTTCATCTGATTACAAAAAATTCCAACGAGTTAGGTAACAACACTATTTCCCTCGAACAATCTCTGCAAATTCTACGCCTGCTCTGGAATAGCAACACCATCAAGCCTCTGGTCATCCAAAACATCGACTTCATCAAATCTTTGACTAGGATTCTCCAGCTCCACGTGGACACCAACGTCAATCTGATCAACGAAGCAATGCCTGTGTTAAAATCCACCATCGAGCTCGTGGATTCAACACTTTTAGGAGGTTTGAAACCCGAATTCTTCAGTGAAATCACAAGGGTGATCAAAAACAGATCAATCTCACAACAAGCCTTGAAGTCCGCCTTGCATATTCTTATGGAAACGTGTCCTTTAGGAAGAAACAGGACGAGGATAGTGGAAGCAAGGGCAGTATGTGAATTGATCGAGCTTGAGCTAGAGAAACCCGAGAAGAAGATAACCGAGCTTACATTTAACCTCCTCGCGCAGCTATGCTCTTGTGCGGACGGGAGGGAACAATTCTTGTCACACGCGGCGGGGATTGCGGTGGCGTCGAAGAGGGTTCTGAGGGTGTCTCCGGCGACGGATGACAGGACCGTTCATGTATTGTGGCTGATGGCGAGGTATTCCGGGTCGAACGACGTTGTTTTGGAAATGTTGAGGGTGGGAGCAGTGTCGAAGCTTTGCATGGTGATTCAAGCCAATTGTGAACCGAGTTTGAAAGAGAAAGCGAGATCGATACTGAGGTTGCACTCCAAGCTTTGGAATAATTCCCCCTGTATTCAAGTTTATCTGTTAACCGGGCACCAAAGGTGA 1224 0.4984 MDEIEVPQYFVCPISLQIMKDPVTTLTGITYDRESIEQWLLKAKDHKCPVTKQPLPRGSDLTPNHTLRRLIQAWCSENAAHGVDRIPTPKSPPNKTLLQKLVRNLQLPQLCQSALERLHALATENQRNLKCMVESGVAESMVHLITKNSNELGNNTISLEQSLQILRLLWNSNTIKPLVIQNIDFIKSLTRILQLHVDTNVNLINEAMPVLKSTIELVDSTLLGGLKPEFFSEITRVIKNRSISQQALKSALHILMETCPLGRNRTRIVEARAVCELIELELEKPEKKITELTFNLLAQLCSCADGREQFLSHAAGIAVASKRVLRVSPATDDRTVHVLWLMARYSGSNDVVLEMLRVGAVSKLCMVIQANCEPSLKEKARSILRLHSKLWNNSPCIQVYLLTGHQR 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0672 407 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Prci6g0672 407 SUPERFAMILY RING/U-box 3 84 - -
Prci6g0672 407 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Prci6g0672 407 CDD RING-Ubox_PUB 7 55 IPR045210 -
Prci6g0672 407 Gene3D - 90 394 IPR011989 -
Prci6g0672 407 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Prci6g0672 407 SUPERFAMILY ARM repeat 107 385 IPR016024 -
Prci6g0672 407 PANTHER WDSAM1 PROTEIN 3 398 IPR045185 GO:0061630
Prci6g0672 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0672 Prci-Chr6 4443818 4445307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0672 2 397 U-box Gene Family AT2G35930 43.069 1.20e-107 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0672 - - gmx:100787419 531.561