Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0653 ATGAACCCAGGATCTAATGAAGCAGCTAATAGCCCCTTTCAGACTCCAATGTCAGGAAAAATGGGGAAGGCAGGCAAAGCTTCAAAGCTTACAAAATGCAGCAAAGCTGGACCTCAAACCTCAGGTTCTAATATTGGTTCTCCCTCTGGAAACAATCTTACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACAAAAAAGTTTATCAACTTGATCAAGCAAGCTGAGGACGGTATCCTTGATTTGAATAAAGCTGCTGATACATTAGAGGTGCAAAAGCGGAGAATATATGACATAACAAACGTTCTTGAAGGGATTGGTCTTATAGAAAAGAAGCTCAAAAACAGAATTCAATGGAAGGGATTGGATGTGTCAAGGCCAGGGGAAGCTGATGATAGTTTTTCTAGTTTGCAGACAGAAGTTGAAAACCTTACTATGGAGGAGCGCCAGTTAGATGAACAGATAAGGGAGATGCAAGAAAGGCTGAGGACACTTAGTGAAGATGAAAACAATCAGAAGTGGCTTTTTGTCACGGAAGACGATATAAAGGATTTGCCCTGCTTCCTGAATGAAACCTTGATAGCTATTAAAGCTCCACATGGCACCACTCTCGAGGTCCCTGATCCTGATGAGGCTGTTGATTATCCCCAAAGGAGATACAGGATAATACTCAGAAGCACAATGGGCCCGATAGATGTTTACCTTGTTAGTCAATTTGAAGAAAAATTTGAGGAGATCAATGGAGTTGATGCGCCACCCAATCTTCCATCCAGTCCAGAGTTTAACAGGCATCAAGCAACAGAGATCCCTGAGGAAAGAAGTAAGGACAAAGAAATACAGGAACAAAATGATGCTAGAGCCAGTTCAGATTTGAGTGCCTCACAGGACTTCGTTAGTGGGATCATGAAGATTGTTCCGTCAGATGTTGATATTGATGCTGATTACTGGCTTCTGTCAAATGCTGATGTTAGCATAACAGACATGTGGAGAACAGAGTCTGGAATTGAATGGAACGAACTGGACGCGCTTAATGAAGATTATTGCATACCTCAAGAGAGCATAGCACGGCCCGAAACTCCTCCAAACACAAGTCAAGTGCCTTCTACAGCTAACCCTAAAGGAGGCTGA 1140 0.4289 MNPGSNEAANSPFQTPMSGKMGKAGKASKLTKCSKAGPQTSGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFSSLQTEVENLTMEERQLDEQIREMQERLRTLSEDENNQKWLFVTEDDIKDLPCFLNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIILRSTMGPIDVYLVSQFEEKFEEINGVDAPPNLPSSPEFNRHQATEIPEERSKDKEIQEQNDARASSDLSASQDFVSGIMKIVPSDVDIDADYWLLSNADVSITDMWRTESGIEWNELDALNEDYCIPQESIARPETPPNTSQVPSTANPKGG 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0653 379 CDD E2F_DD 136 242 IPR032198 GO:0046983
Prci6g0653 379 MobiDBLite consensus disorder prediction 1 17 - -
Prci6g0653 379 SMART E2F_TDP_2 60 125 IPR003316 GO:0005667|GO:0006355
Prci6g0653 379 Coils Coil 76 96 - -
Prci6g0653 379 FunFam E2F transcription factor 1 54 127 - -
Prci6g0653 379 MobiDBLite consensus disorder prediction 360 379 - -
Prci6g0653 379 SUPERFAMILY E2F-DP heterodimerization region 138 242 IPR037241 -
Prci6g0653 379 Pfam E2F/DP family winged-helix DNA-binding domain 62 125 IPR003316 GO:0005667|GO:0006355
Prci6g0653 379 MobiDBLite consensus disorder prediction 269 288 - -
Prci6g0653 379 PANTHER TRANSCRIPTION FACTOR E2F 10 341 IPR015633 GO:0000978|GO:0006357
Prci6g0653 379 Coils Coil 138 172 - -
Prci6g0653 379 Gene3D - 132 242 - -
Prci6g0653 379 MobiDBLite consensus disorder prediction 356 379 - -
Prci6g0653 379 Gene3D - 54 127 IPR036388 -
Prci6g0653 379 Pfam E2F transcription factor CC-MB domain 141 241 IPR032198 GO:0046983
Prci6g0653 379 MobiDBLite consensus disorder prediction 1 55 - -
Prci6g0653 379 SUPERFAMILY "Winged helix" DNA-binding domain 60 123 IPR036390 -
Prci6g0653 379 MobiDBLite consensus disorder prediction 33 55 - -
Prci6g0653 379 MobiDBLite consensus disorder prediction 252 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0653 Prci-Chr6 4276218 4280873 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0653 6 378 E2F-DP Transcription Factor Family AT5G22220 60.859 1.81e-153 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Prci6g0653 E2F_CC-MB 1.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0653 K06620 - gmx:100819817 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci6g0653 6 4276218 4280873 Prci6g0653 6 4276218 4280873 ECH