Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0652 ATGTCTTCCTCCTCCCATCCCCCCGACCAGATCATTCACTCCATGAAACGACAACTCCCATTCTCCTCCATGAAGCCGTCCTTTGTTGCTCCGGCAGATTATCATCGCTTCGCGCCCGACCATCGCCGACCTGCTCACCAAGAAGTTGAAACCATCGTCGTTAAGTCCCCTCAATTGAAGCGAAAGATTACCACAGCCAATTCTGAAGCTGATTCCGTTGATAGGATGAACCCAGGATCTAATGAAGCAGCTAATAGCCCCTTTCAGACTCCAATGTCAGGAAAAATGGGGAAGGCAGGCAAAGCTTCAAAGCTTACAAAATGCAGCAAAGCTGGACCTCAAACCTCAGGTTCTAATATTGGTTCTCCCTCTGGAAACAATCTTACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACAAAAAAGTTTATCAACTTGATCAAGCAAGCTGAGGACGGTATCCTTGATTTGAATAAAGCTGCTGATACATTAGAGGTGCAAAAGCGGAGAATATATGACATAACAAACGTTCTTGAAGGGATTGGTCTTATAGAAAAGAAGCTCAAAAACAGAATTCAATGGAAGGGATTGGATGTGTCAAGGCCAGGGGAAGCTGATGATAGTTTTTCTAGTTTGCAGACAGAAGTTGAAAACCTTACTATGGAGGAGCGCCAGTTAGATGAACAGATAAGGGAGATGCAAGAAAGGCTGAGGACACTTAGTGAAGATGAAAACAATCAGAAGTGGCTTTTTGTCACGGAAGACGATATAAAGGATTTGCCCTGCTTCCTGAATGAAACCTTGATAGCTATTAAAGCTCCACATGGCACCACTCTCGAGGTCCCTGATCCTGATGAGGCTGTTGATTATCCCCAAAGGAGATACAGGATAATACTCAGAAGCACAATGGGCCCGATAGATGTTTACCTTGTTAGTCAATTTGAAGAAAAATTTGAGGAGATCAATGGAGTTGATGCGCCACCCAATCTTCCATCCAGTCCAGAGTTTAACAGGCATCAAGCAACAGAGATCCCTGAGGAAAGAAGTAAGGACAAAGAAATACAGGAACAAAATGATGCTAGAGCCAGTTCAGATTTGAGTGCCTCACAGGACTTCGTTAGTGGGATCATGAAGATTGTTCCGTCAGATGTTGATATTGATGCTGATTACTGGCTTCTGTCAAATGCTGATGTTAGCATAACAGACATGTGGAGAACAGAGTCTGGAATTGAATGGAACGAACTGGACGCGCTTAATGAAGATTATTGCATACCTCAAGAGAGCATAGCACGGCCCGAAACTCCTCCAAACACAAGTCAAGTGCCTTCTACAGCTAACCCTAAAGGAGGCTGA 1365 0.4432 MSSSSHPPDQIIHSMKRQLPFSSMKPSFVAPADYHRFAPDHRRPAHQEVETIVVKSPQLKRKITTANSEADSVDRMNPGSNEAANSPFQTPMSGKMGKAGKASKLTKCSKAGPQTSGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFSSLQTEVENLTMEERQLDEQIREMQERLRTLSEDENNQKWLFVTEDDIKDLPCFLNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIILRSTMGPIDVYLVSQFEEKFEEINGVDAPPNLPSSPEFNRHQATEIPEERSKDKEIQEQNDARASSDLSASQDFVSGIMKIVPSDVDIDADYWLLSNADVSITDMWRTESGIEWNELDALNEDYCIPQESIARPETPPNTSQVPSTANPKGG 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0652 454 Coils Coil 213 247 - -
Prci6g0652 454 SUPERFAMILY "Winged helix" DNA-binding domain 135 198 IPR036390 -
Prci6g0652 454 MobiDBLite consensus disorder prediction 435 454 - -
Prci6g0652 454 MobiDBLite consensus disorder prediction 431 454 - -
Prci6g0652 454 MobiDBLite consensus disorder prediction 344 363 - -
Prci6g0652 454 SMART E2F_TDP_2 135 200 IPR003316 GO:0005667|GO:0006355
Prci6g0652 454 SUPERFAMILY E2F-DP heterodimerization region 213 317 IPR037241 -
Prci6g0652 454 PANTHER TRANSCRIPTION FACTOR E2F 74 415 IPR015633 GO:0000978|GO:0006357
Prci6g0652 454 MobiDBLite consensus disorder prediction 65 130 - -
Prci6g0652 454 FunFam E2F transcription factor 1 129 202 - -
Prci6g0652 454 CDD E2F_DD 211 317 IPR032198 GO:0046983
Prci6g0652 454 Coils Coil 151 171 - -
Prci6g0652 454 Gene3D - 207 317 - -
Prci6g0652 454 MobiDBLite consensus disorder prediction 108 130 - -
Prci6g0652 454 MobiDBLite consensus disorder prediction 327 371 - -
Prci6g0652 454 Gene3D - 129 202 IPR036388 -
Prci6g0652 454 Pfam E2F/DP family winged-helix DNA-binding domain 137 200 IPR003316 GO:0005667|GO:0006355
Prci6g0652 454 Pfam E2F transcription factor CC-MB domain 216 316 IPR032198 GO:0046983
Prci6g0652 454 MobiDBLite consensus disorder prediction 65 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0652 Prci-Chr6 4276218 4281211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0652 14 453 E2F-DP Transcription Factor Family AT5G22220 57.356 4.20e-164 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Prci6g0652 E2F_CC-MB 1.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0652 K06620 - gmx:100819817 693.345