Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0601 ATGTACCATCATCACCAACACCAAGGAAAGAACATCCATTCTTCTTCTTCCAGAATGCCAATCTCGGCTGAGAGGCACATGTTCCTTCAAACTGGAAATGGCTCTGGTGATTCTGGACTCGTCCTCTCTACTGATGCTAAGCCCAGATTGAAATGGACAGCAGATCTTCATGCCAGGTTTATAGAAGCGGTCAATCAGCTAGGTGGAGCTGACAAAGCAACTCCGAAGACAGTAATGAAACTCATGGGAATTCCAGGGCTTACTTTGTATCATCTAAAGAGCCATCTTCAGAAGTATAGATTGAGCAAGAATCTGCATGGACAAAGTAACAACGTGACACACAAAATCACAACTAATGCAGGTGCAGCAACGGCAGAAAGACTTTCTGAAACAAGTGGAACACATATGAATAATTTAAGCCTCGGGCCACAAGCTAACAAAGATTTACACATAAGCGAGGCCCTGCAGATGCAGATTGAGGTGCAGAGAAGGCTAAATGAACAACTTGAGGTGCAGAGACACTTGCAGCTTCGCATAGAGGCCCAAGGGAAATACCTGCAGGCTGTGCTTGAGAAAGCTCAAGAAACACTTGGTAGACAGAATTTGGGGGTAGTGGGACTTGAAGCAGCCAAAGTTCAACTCTCAGAACTTGTGTCCAAAGTATCCTCTCAGTGCTTGAGTTCTGCCTTTTCAGAACTGAAGGAACTACAAGGATTCTGCCCACAGCAAACACAAAACAACCAGCCAACCGACTGCTCAATGGACAGCTGCCTCACATCCTGCGATGGATCTCAAAAGGATCAAGAAATACAAAATGCAGGGATGGGCTTACGATCCTTCAATGGACATTCATTCATGGAAAGAAAGGGAGCCATGGAAGCACCCATCTTAAGGAACTCTGAACTCAAGTGGTGTGATGAAGTGAAAAGGAACAGCACCTTTCTGAGCAATTCTTTGGGTAAGAGTGCGGAAAGAAGAGGTTACGCTGCCGAAAGAAGTCCCAGCGACTTATCTATGAGCATCGGACTTGAACGAGAAACCGAGAATAACGGAAGCAGCATGTATCCTGAGAGACTAATGATGGGGAGAGAGTCAGGTGGTGAGTTCCAACACCGAAACGCAAGTAAACAAGAATCAATAAAACCACTGGAAGAAAAGGTACCTCAGGAGTATAGATTGCCTTACTTCGCAACATCAAGACTGGACCTCAACACCCGTGAAGAAACCGATGCTGCGGTGAGCTGCAAACAACTGGATTTGAATGGACTCAGCTGGAGCTGA 1281 0.4575 MYHHHQHQGKNIHSSSSRMPISAERHMFLQTGNGSGDSGLVLSTDAKPRLKWTADLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTHKITTNAGAATAERLSETSGTHMNNLSLGPQANKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGVVGLEAAKVQLSELVSKVSSQCLSSAFSELKELQGFCPQQTQNNQPTDCSMDSCLTSCDGSQKDQEIQNAGMGLRSFNGHSFMERKGAMEAPILRNSELKWCDEVKRNSTFLSNSLGKSAERRGYAAERSPSDLSMSIGLERETENNGSSMYPERLMMGRESGGEFQHRNASKQESIKPLEEKVPQEYRLPYFATSRLDLNTREETDAAVSCKQLDLNGLSWS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0601 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 104 IPR017930 -
Prci6g0601 426 Pfam MYB-CC type transfactor, LHEQLE motif 150 196 IPR025756 -
Prci6g0601 426 SUPERFAMILY Homeodomain-like 46 102 IPR009057 -
Prci6g0601 426 Pfam Myb-like DNA-binding domain 49 100 IPR001005 -
Prci6g0601 426 FunFam Myb family transcription factor 46 104 - -
Prci6g0601 426 Coils Coil 152 172 - -
Prci6g0601 426 Gene3D - 46 104 - -
Prci6g0601 426 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 303 IPR044848 GO:0003700
Prci6g0601 426 NCBIfam myb-like DNA-binding domain, SHAQKYF class 47 102 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0601 Prci-Chr6 4019847 4022994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0601 79 426 G2-like Transcription Factor Family AT3G04030 51.282 2.45e-105 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Prci6g0601 Myb_DNA-binding 1.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0601 - - gmx:100810396 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci7g2387 7 36590764 36593388 Prci6g0601 6 4019847 4022994 CCT