Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0582 ATGGGTCTGAGAGATCAGTACTGCAATGTGCAAGATAAGACTAATCCCTACTTTCATGCTTCTCCAACTTTCATAGAATGGCTCAAACCATCATCATCATCTTCTTCTTCTTCTGATGAGACTTGTCAAAACGAGGTCGTTCGGGAGACTATCCAGTTTTTGCCTCCATCGAAAGATTTGGAAGTTGGAAGGGAAAAGGAGGTGTTTGGGTCAGTGAAAGAAGAGAAGGTACTGCTGGAGCAAGTGGGGGTGGCTTTGCACATTGGGTTACCTACCAATTATACAGAATACAGTGATGGGGCTGATGTGAAGAAGAAGGTGATTGATGTTAAAGAAGAAGATGAGGAAGAAGAAGAAGAAGGCATGATGATGATGAAGAGAAGCTTCCATGGATTTAACCAGGAGAGAAGGTTCTGGATACCAACTCCTGCACAGATCCTTATTGGGCCGATGCAGTTTGCTTGCTCCATATGCAGCAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGGTCCGAATTTAGGAAAGGACCAGACTCTCTAAGAGGAACACAACCAGCAGCAATGCTGAGGCTACCATGTTATTGCTGTGCTCATGGCTGCAAGAACAACATCAACCATCCGAGAGCTAAGCCACTCAAGGACTTCAGAACCCTGCAGACCCACTACAAGAGAAAGCATGGCTCCAAACCCTTCATGTGCAGAAAGTGTGCCAAGACTTTCGCTGTCAAAGGAGATTGGAGGACTCACGAGAAGAACTGTGGCAAGTTGTGGTATTGCACTTGTGGTTCAGATTTCAAGCACAAGAGATCCCTCAAGGATCATATTAGGTCATTCGGAAAGGGTCACAAACCCCATCCTTCTCTTGAAGGTTTTGAGAAGGACTCGGAAGAAGATGAAGTTGTTACTACTCACACATAA 936 0.4509 MGLRDQYCNVQDKTNPYFHASPTFIEWLKPSSSSSSSSDETCQNEVVRETIQFLPPSKDLEVGREKEVFGSVKEEKVLLEQVGVALHIGLPTNYTEYSDGADVKKKVIDVKEEDEEEEEEGMMMMKRSFHGFNQERRFWIPTPAQILIGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAHGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCAKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHKPHPSLEGFEKDSEEDEVVTTHT 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0582 311 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 180 IPR013087 -
Prci6g0582 311 PANTHER ZINC FINGER PROTEIN WIP2 27 305 IPR043584 GO:0003700|GO:0010468
Prci6g0582 311 SUPERFAMILY beta-beta-alpha zinc fingers 149 176 IPR036236 -
Prci6g0582 311 SUPERFAMILY beta-beta-alpha zinc fingers 223 257 IPR036236 -
Prci6g0582 311 MobiDBLite consensus disorder prediction 286 311 - -
Prci6g0582 311 ProSiteProfiles Zinc finger C2H2 type domain profile. 257 290 IPR013087 -
Prci6g0582 311 Gene3D Classic Zinc Finger 195 285 - -
Prci6g0582 311 MobiDBLite consensus disorder prediction 282 311 - -
Prci6g0582 311 Gene3D Classic Zinc Finger 152 175 - -
Prci6g0582 311 SMART c2h2final6 153 175 IPR013087 -
Prci6g0582 311 SMART c2h2final6 200 232 IPR013087 -
Prci6g0582 311 SMART c2h2final6 237 257 IPR013087 -
Prci6g0582 311 ProSitePatterns Zinc finger C2H2 type domain signature. 155 175 IPR013087 -
Prci6g0582 311 FunFam Zinc finger protein WIP2 206 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0582 Prci-Chr6 3929196 3932774 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0582 21 302 C2H2 Transcription Factor Family AT1G08290 57.879 1.35e-119 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci6g0582 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0582 - - gmx:100802773 435.647