Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0563 ATGGATTTTGAAAATGGATCATGTCCAAGCTCAGCACAAAACCCTAGTTCTCCTACGTCGCAAATTGCATCTCGCAAAAAGAAAGCGGGGAGAAAGAAGTTTCAGGAGACTCGACACCCGCTGTTTCGTGGTGTCCGGAGACGCAACGGCGACCGCTGGGTTTGTGAAGTCCGGGAACCGAACAAGAAGTCCAGGATTTGGCTGGGCACTTACCGTGATCCAGAAATGGCGGCTAGGGCACATGACGTGGCTGCCCTAGCTCTCCGAGGCAGCTCGGCGACACTGAATTTCCCCAATCTGGCTCAGCTTCTTCCGGCTGCCACCTCATCCTCGGCCCAAGACATCAGAACGGCTGCGGCTGAAGCCGCCCACGCTTTCAAACCAACCGCCTCTTCTTCCTTAAGGTCGTCCCCCTCCCCAAACGCATTCCCAGCAGAGGATGAAGAAAAGAGCAATGACAAGTTGTTCTTCGATGAGGAGGCATTGTATAATATGCCGAGTCTGTTAGATCATATGGCTGAGGGTTTGCTTCTCAGCCCTCCCTCTATGTGCAGCAAGGCCTTGGGTTTAGCTTTGGACGATGACTTTACTTTACCGCTTACAGACACAACAGCTGGCGTTCCAAAATCATCCTGCTACGCCATTGATCATCATCAGCGTGATCAGCAACTAGGTGGAAACCACTTGGCATTAACTTTTCCTGGAGAAGAAGAAGAATCCAGCAGTCTAATTAGTTCTGTGTTTCGTGATTATTACCCTCGTCAAAACATGGCTCTTCATTCTCCTCCTACACACGGCATTGAGCAGGACCAAACCCTCAGGCCACCCTATGATGACGACCCTCCGGCTTCAGCATCCATTGACCATGAACGCAGGGACAACGGTGGGGAGGTAGGGCAAAGAGAGACTTGGCAGAGCGAGCTAAGTCTGAAGTGGCTCCTTCATCCGTCAACGACCCACCGTTGCCTACCCATGATGTCTCTCTCTCTTCCCCTCCCGCTCTCTCAGGCCTCCACTACAAGCTTCCAGAAATGA 1035 0.5217 MDFENGSCPSSAQNPSSPTSQIASRKKKAGRKKFQETRHPLFRGVRRRNGDRWVCEVREPNKKSRIWLGTYRDPEMAARAHDVAALALRGSSATLNFPNLAQLLPAATSSSAQDIRTAAAEAAHAFKPTASSSLRSSPSPNAFPAEDEEKSNDKLFFDEEALYNMPSLLDHMAEGLLLSPPSMCSKALGLALDDDFTLPLTDTTAGVPKSSCYAIDHHQRDQQLGGNHLALTFPGEEEESSSLISSVFRDYYPRQNMALHSPPTHGIEQDQTLRPPYDDDPPASASIDHERRDNGGEVGQRETWQSELSLKWLLHPSTTHRCLPMMSLSLPLPLSQASTTSFQK 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0563 344 FunFam Ethylene-responsive transcription factor 2 40 99 - -
Prci6g0563 344 CDD AP2 40 100 IPR001471 GO:0003700|GO:0006355
Prci6g0563 344 MobiDBLite consensus disorder prediction 283 298 - -
Prci6g0563 344 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Prci6g0563 344 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Prci6g0563 344 PRINTS Ethylene responsive element binding protein signature 80 100 IPR001471 GO:0003700|GO:0006355
Prci6g0563 344 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 17 185 IPR045277 GO:0003700
Prci6g0563 344 MobiDBLite consensus disorder prediction 258 302 - -
Prci6g0563 344 MobiDBLite consensus disorder prediction 1 24 - -
Prci6g0563 344 MobiDBLite consensus disorder prediction 126 150 - -
Prci6g0563 344 SUPERFAMILY DNA-binding domain 41 99 IPR016177 GO:0003677
Prci6g0563 344 Pfam AP2 domain 40 90 IPR001471 GO:0003700|GO:0006355
Prci6g0563 344 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Prci6g0563 344 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Prci6g0563 344 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0563 Prci-Chr6 3722864 3728977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0563 2 198 AP2-EREBP Transcription Factor Family AT4G25470 47.573 4.49e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci6g0563 AP2 1.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0563 - - pcin:129313218 657.907